Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 115873 |
| Name | oriT_BFG-299|unnamed1  |
| Organism | Bacteroides ovatus strain BFG-299 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP103131 (10937..11110 [+], 174 nt) |
| oriT length | 174 nt |
| IRs (inverted repeats) | 57..63, 66..72 (CAATGGC..GCCATTG) 18..23, 37..42 (AACTAC..GTAGTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 174 nt
>oriT_BFG-299|unnamed1
CCCTCGGGAGAGCCCACAACTACGTAAGCGGAGCGTGTAGTTATAGTGGGCTATATCAATGGCAAGCCATTGTCTGCAAACTCCAGCCTACGGCTTCCGCTCTCCTCCGTCAGGGAGGTTTTTCATCATCGTTGCCGATTGGAGATGCACCGACCAGCACAAGGTCTAAATCGT
CCCTCGGGAGAGCCCACAACTACGTAAGCGGAGCGTGTAGTTATAGTGGGCTATATCAATGGCAAGCCATTGTCTGCAAACTCCAGCCTACGGCTTCCGCTCTCCTCCGTCAGGGAGGTTTTTCATCATCGTTGCCGATTGGAGATGCACCGACCAGCACAAGGTCTAAATCGT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 16306 | GenBank | NZ_CP103131 |
| Plasmid name | BFG-299|unnamed1 | Incompatibility group | - |
| Plasmid size | 11598 bp | Coordinate of oriT [Strand] | 10937..11110 [+] |
| Host baterium | Bacteroides ovatus strain BFG-299 |
Cargo genes
| Drug resistance gene | cfxA |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |