Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115847
Name   oriT_pIC081G in_silico
Organism   Sphingomonas sp. IC081
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP029769 (5774..5806 [+], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      4..9, 14..19  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pIC081G
CACGCAAACGCAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10150 GenBank   WP_142640291
Name   mobQ_DM450_RS25630_pIC081G insolico UniProt ID   _
Length   403 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 403 a.a.        Molecular weight: 45058.01 Da        Isoelectric Point: 8.5129

>WP_142640291.1 MobQ family relaxase [Sphingomonas sp. IC081]
MASFHLAVKTIGRSAGRSATAAAAYRAGVEITDERTGLVHDYTRKQGVEHSALVVPADAPAWANDRAALW
NAAEQAETRKNSTVAREYEIALPAELSTEARRELALGLAREISERHGVAVDVAIHAPGREGDQRNHHAHL
LTTTRRIGPEGLGEKTRELDQKTSGEVERWRGRWAEMQNVALERAGSVERVDHRSHQRQGIEQEATVHMG
PSATAMERRAEHQAMREGRAYEPVTMVGQHNAGVIERRGLRQYIERGTEWLRDAGQRISGRLHAFAATLS
GAVDRDRRDAAEAQRQEQLAAERAREQAQERQQAQEREKVAEKFRSIAGKREAGAHGYGDHNSDWKATPE
ALRKAVDAYNGANQHTKDLYIEQIQREPQMARAVGQLLHERELVLQRDRGMSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-219)


  Protein structure



No available structure.




Host bacterium

ID   16280 GenBank   NZ_CP029769
Plasmid name   pIC081G Incompatibility group   -
Plasmid size   7272 bp Coordinate of oriT [Strand]   5774..5806 [+]
Host baterium   Sphingomonas sp. IC081

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -