Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115846
Name   oriT_pIC081F in_silico
Organism   Sphingomonas sp. IC081
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP029768 (2799..2831 [+], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      4..9, 14..19  (GCAAAC..GTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT_pIC081F
CACGCAAACGCAAGTTTGCATAAGTGCGCCCTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10149 GenBank   WP_231736769
Name   mobQ_DM450_RS25555_pIC081F insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 45714.81 Da        Isoelectric Point: 9.4523

>WP_231736769.1 MULTISPECIES: MobQ family relaxase [Sphingomonadaceae]
MASKGAAMASFHLAVKTISRSAGRSATAAAAYRAGVEITDERTGLVHDYTRKQGVEHNALVVPADAPAWA
NNRAALWNAAEQAETRKNSTVAREYEIALPAELSAEARRELALGLAREISERHGVAVDVAIHAPGREGDQ
RNHHAHLLTTTRRIGPEGLGEKTRELDQKTSGEVERWRGRWAEMQNVALERAGSVERVDHRSHQRQGIEQ
EATVHMGPSATAMERRAEHQAMREGRAYEPVTMVGQHNAGVIERRGLRQYIERGTEWLRDAGQRISGRLH
AFAATLSGAVDRDRRDAAEAQRQEQLAAERAREQAQERQQAQEREKVAEKFRTIAGKREAGAHGYGDHNS
DWKATPEALRKAVDAYNGANQHTKDLYIEQIQREPQMARAVGQLLHERELVLQRDRGMSL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(24-226)


  Protein structure



No available structure.




Host bacterium

ID   16279 GenBank   NZ_CP029768
Plasmid name   pIC081F Incompatibility group   -
Plasmid size   7130 bp Coordinate of oriT [Strand]   2799..2831 [+]
Host baterium   Sphingomonas sp. IC081

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -