Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 115798 |
| Name | oriT_pSPseroIa  |
| Organism | Streptococcus parauberis strain HFTC0064 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP104191 (10108..10244 [-], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 80..86, 88..94 (CTTTGTA..TACAAAG) 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_pSPseroIa
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCAACTTTGTAATACAAGAACGAAGTGCTTTGTATTACAAAGTGATAGCTTGCAGTATTTTTTGATTTATATTTGCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCAACTTTGTAATACAAGAACGAAGTGCTTTGTATTACAAAGTGATAGCTTGCAGTATTTTTTGATTTATATTTGCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10119 | GenBank | WP_003109084 |
| Name | Relaxase_N2A95_RS11105_pSPseroIa |
UniProt ID | _ |
| Length | 410 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 410 a.a. Molecular weight: 47672.27 Da Isoelectric Point: 9.0552
>WP_003109084.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactobacillales]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAEKLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGNKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMNDLRE
RINKSLQDVSVSSYEAFKERLSDNGINISERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFSAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESKINRFIDTIKQFAGRVPELTQ
RVTRKLKQTKDKILDDFERRFSKDMKNYEKEQQKSLEKQANRDVQSEKKPTKDHDRGMSR
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAEKLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGNKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMNDLRE
RINKSLQDVSVSSYEAFKERLSDNGINISERGQTFSYAFLDANNKQRRARETRLGSDFGRETILHELENR
ARQNEFSAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESKINRFIDTIKQFAGRVPELTQ
RVTRKLKQTKDKILDDFERRFSKDMKNYEKEQQKSLEKQANRDVQSEKKPTKDHDRGMSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 16231 | GenBank | NZ_CP104191 |
| Plasmid name | pSPseroIa | Incompatibility group | - |
| Plasmid size | 12786 bp | Coordinate of oriT [Strand] | 10108..10244 [-] |
| Host baterium | Streptococcus parauberis strain HFTC0064 |
Cargo genes
| Drug resistance gene | tet(S) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |