Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115759
Name   oriT_p1613 in_silico
Organism   Glaesserella parasuis strain YHP1613
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_OM219181 (3621..3800 [+], 180 nt)
oriT length   180 nt
IRs (inverted repeats)      105..110, 124..129  (TGAAGT..ACTTCA)
 18..23, 30..35  (AGGAAA..TTTCCT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 180 nt

>oriT_p1613
GGGTAAAGGAAGAATTGAGGAAATAGAGGTTTCCTGTATTGAACCATATAGTCAAGTAATGTTCCATCTGGGATACGAGTTTGATGAAAATGATGCACATGATGTGAAGTTATTGTGTGAGACACTTCATATCGAAATTCCAAATGAGTATAGATAACTGCAAATAACAGTTTGTAGGGG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   10092 GenBank   WP_012725026
Name   Relaxase_N4J58_RS00010_p1613 insolico UniProt ID   C3W5R0
Length   541 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 541 a.a.        Molecular weight: 62730.58 Da        Isoelectric Point: 9.6040

>WP_012725026.1 relaxase/mobilization nuclease domain-containing protein [Glaesserella parasuis]
MLVKFFNTGKGSARHAFDYLLNNERVKNGTAKLVKGNPDVITFLTEQRMKEPSYRGGALYTSGVLSFSPE
ESKSLTDSNLGAIIGRFEATIFPKLDITRFNIAWVLHKDKDRTELHFVIQNFDLETKKAFTPFVADRDLS
RVNQFKDKVNADFNLSDPNLVKSHYHVKGLKRLSEEQKSFYRELNKAYAQYVEERENPSFIKQAKGILSK
IMGQNEPQAHDLHSNEDKHAFLQKFITEHFKGLKINRSSDKYASVDFNGSKMRLFYEKFVVKELDDAFKI
KVEQNKEKGLLPVDSGPIFAELLQSYRQAIQQAKAEKERLKRAEEEAEKERLRLVALEKQKELENKFRAI
LNGSKDVFIEKVIKKVIDQDYKTRCNELLEPTWMGTNKIHNFICYSKELSSDDLNAEMNKIKQAVEQEFG
KTRLDELEVKGFFNLQSAISKLETMQETTLVKLKDVYIDFYKKVDTARFNKFKAEVDEYKSTHRSNAVML
EYRDYATAFLNDLLPRMERSLTVSNPSVEAEKTSVYQPQPQAKPNAPKFRM

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(57-160)


  Protein structure


Source ID Structure
AlphaFold DB C3W5R0


Host bacterium

ID   16192 GenBank   NZ_OM219181
Plasmid name   p1613 Incompatibility group   -
Plasmid size   6320 bp Coordinate of oriT [Strand]   3621..3800 [+]
Host baterium   Glaesserella parasuis strain YHP1613

Cargo genes

Drug resistance gene   lnu(C)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -