Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 115756 |
| Name | oriT_25037-CP01|unnamed2  |
| Organism | Clostridium perfringens strain 25037-CP01 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP109959 (41285..41432 [-], 148 nt) |
| oriT length | 148 nt |
| IRs (inverted repeats) | 133..138, 142..147 (ATACAT..ATGTAT) 20..25, 28..33 (TTTAAA..TTTAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 148 nt
>oriT_25037-CP01|unnamed2
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAGAAGTTCCCTGTATTAATATTAGTATTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATACATATAATATATACATATAATGTATT
AAGGAACTTTACAGGGAACTTTAAAAATTTAAATTGATATAGAAGTTCCCTGTATTAATATTAGTATTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATACATATAATATATACATATAATGTATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 11783 | GenBank | WP_110035312 |
| Name | tcpA_OKA01_RS16225_25037-CP01|unnamed2 |
UniProt ID | _ |
| Length | 529 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 529 a.a. Molecular weight: 60777.06 Da Isoelectric Point: 7.1973
>WP_110035312.1 FtsK/SpoIIIE domain-containing protein [Clostridium perfringens]
MSSDWEKKVNQEIENGLNAIINEIANVLRIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMAIISFVNRKGDKVEEEFKKAFEEMGFIDISGNAPKLINIKHDELTGID
QYFFKTYIPLDDWQPKARLMESRLNKTIFEIIQGIDKQTVQMNALEGSVKVSDKLLWSNDLIREEGVLNF
GKSISSEIKIDLDEQPHVLVAGQTGSGKSVLMRCLLWQVYCQGADVYMIDFKAGVEFGLDYEKIGKVMTE
VDETLKLLETLIVENTDRLKKFREAKVKNLKEYNKKFKTHLKRKVVFIDEMAQLMDSSGVDKETKAKLEK
ISYCIATLARTARASGINLVLGAQRPDANVMNGQIKNNVTVRVCGRFADGPVSEIVLGNNKAKKLPEIKG
RFLFKVDANTIEFQAYYFNDDKDFKPEQVERQKSQDEFISIKSSDDDLIIEDAPVENISVIENKTFDDIK
QEIDVNKDLKQEKQDVNKELKSKNKTDILSSKDWDASNF
MSSDWEKKVNQEIENGLNAIINEIANVLRIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMAIISFVNRKGDKVEEEFKKAFEEMGFIDISGNAPKLINIKHDELTGID
QYFFKTYIPLDDWQPKARLMESRLNKTIFEIIQGIDKQTVQMNALEGSVKVSDKLLWSNDLIREEGVLNF
GKSISSEIKIDLDEQPHVLVAGQTGSGKSVLMRCLLWQVYCQGADVYMIDFKAGVEFGLDYEKIGKVMTE
VDETLKLLETLIVENTDRLKKFREAKVKNLKEYNKKFKTHLKRKVVFIDEMAQLMDSSGVDKETKAKLEK
ISYCIATLARTARASGINLVLGAQRPDANVMNGQIKNNVTVRVCGRFADGPVSEIVLGNNKAKKLPEIKG
RFLFKVDANTIEFQAYYFNDDKDFKPEQVERQKSQDEFISIKSSDDDLIIEDAPVENISVIENKTFDDIK
QEIDVNKDLKQEKQDVNKELKSKNKTDILSSKDWDASNF
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 16189 | GenBank | NZ_CP109959 |
| Plasmid name | 25037-CP01|unnamed2 | Incompatibility group | - |
| Plasmid size | 69021 bp | Coordinate of oriT [Strand] | 41285..41432 [-] |
| Host baterium | Clostridium perfringens strain 25037-CP01 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |