Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115732
Name   oriT_pJM4E in_silico
Organism   Lactococcus cremoris strain JM4
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP122375 (13038..13174 [+], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_pJM4E
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   11766 GenBank   WP_011669127
Name   tcpA_LLJM4_RS13640_pJM4E insolico UniProt ID   _
Length   358 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 358 a.a.        Molecular weight: 40785.17 Da        Isoelectric Point: 7.4643

>WP_011669127.1 MULTISPECIES: cell division protein FtsK [Lactococcus]
MTNSQLALYLLQSLNMALGSQIEGETSYTNSFDVKVQEDGFLFLPRMPSGYIIDNDLYFKIFLIANACLY
PRYTLLKQNSAYFIPINTDDIHTQRGLFFPWKVGISKRLVINDLDFFVASQHKPYIPIMENLKLNYDNVT
SIAIAGNSGSGKSYTLTYFLSMLKPLSDLIIIDPKFDTPSRWARENKIPVIHPERNRSKSDFVAEINESL
SQTLNIIYKRQEILYDNPRHPFSHLTIVIDEVLALSEGTNKNIKDSFFSLISQIALLGRATKVHLLLVSQ
RFDYQSIPVSVREQLNVLIQIGNINKKTVQFLFPDLDPEGIVIPLGKGTGLIQIIDNEHPYQVLPLLCPT
YYTKKGIL

  Protein domains



No domain identified.


  Protein structure



No available structure.




Host bacterium

ID   16165 GenBank   NZ_CP122375
Plasmid name   pJM4E Incompatibility group   -
Plasmid size   14140 bp Coordinate of oriT [Strand]   13038..13174 [+]
Host baterium   Lactococcus cremoris strain JM4

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -