Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 115731 |
| Name | oriT_2023.05|unnamed2  |
| Organism | Staphylococcus warneri strain 2023.05 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP134466 (4207..4326 [+], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 52..58, 62..68 (TTGGGGA..TCCCCAA) 22..29, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_2023.05|unnamed2
AGTGGCTATCAATTAGCCACTATTTTTTCGTCAGAAAAAATCATAAGGGGCTTGGGGAGTATCCCCAACAAGCAGGCGACGATACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTATCAATTAGCCACTATTTTTTCGTCAGAAAAAATCATAAGGGGCTTGGGGAGTATCCCCAACAAGCAGGCGACGATACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 10075 | GenBank | WP_145392615 |
| Name | Relaxase_RIU93_RS12780_2023.05|unnamed2 |
UniProt ID | _ |
| Length | 336 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 336 a.a. Molecular weight: 38479.25 Da Isoelectric Point: 6.7284
>WP_145392615.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcus]
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHNDTDHIHNHIVINAINLETGKKFNNNKQALRDLRNLNDEVCLEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGITIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRQQQTERASNTEFQPKRPTSSRDESTERDTGVTQSD
WDQFAQDTNELERRRQATESARLADEKARRDREEREREKQTSRTIINDDRDHGLEL
MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQSFKPGEVTPE
QCNQLGLALAEKLAPNHQVAVYTHNDTDHIHNHIVINAINLETGKKFNNNKQALRDLRNLNDEVCLEHGL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSQATNMDEFKDHLNQHGITIERVTPKSI
TYRHLAEDKKVRGRKLGEDYNKGGIEDGFERQIQRQQQTERASNTEFQPKRPTSSRDESTERDTGVTQSD
WDQFAQDTNELERRRQATESARLADEKARRDREEREREKQTSRTIINDDRDHGLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 16164 | GenBank | NZ_CP134466 |
| Plasmid name | 2023.05|unnamed2 | Incompatibility group | - |
| Plasmid size | 33176 bp | Coordinate of oriT [Strand] | 4207..4326 [+] |
| Host baterium | Staphylococcus warneri strain 2023.05 |
Cargo genes
| Drug resistance gene | msr(A), mupA, aadD, lnu(A) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |