Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115580
Name   oriT_JGS49|unnamed4 in_silico
Organism   Lactiplantibacillus plantarum strain JGS49
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP134076 (16966..16991 [+], 26 nt)
oriT length   26 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 26 nt

>oriT_JGS49|unnamed4
ATTTTGGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9974 GenBank   WP_074030474
Name   mobQ_RIF09_RS15920_JGS49|unnamed4 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80502.44 Da        Isoelectric Point: 9.6617

>WP_074030474.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGQHYFYARSVMPDSFILTPKNSPAWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSADEQKELLIKYVQENFVDQGMVADVAIHRDHADNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKTYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAASVNHVLEQKNIP
DRISEKSFIDQGIDDTPTQHEGINSKRHERKAFNQQVKSYRKSKAGYKNMQEKVVNRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAIGEDVTKQLLMINQQESSLKKADELLNKLV
DRTIKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMNIRDDLLNRQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEKVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYQEVLR
RAFPNGNFNELPMIKQEQAYTAVMYYDPALKPCKVETIAQWQENPPRVFTTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKADPMIKNSQSEKIQKQLKEQQAKDDQYRKANMGHYQPLNYKPVSPKY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMAKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)

MobA/MobL family (MobA_MobL)

(17-241)


  Protein structure



No available structure.




Host bacterium

ID   16013 GenBank   NZ_CP134076
Plasmid name   JGS49|unnamed4 Incompatibility group   -
Plasmid size   27908 bp Coordinate of oriT [Strand]   16966..16991 [+]
Host baterium   Lactiplantibacillus plantarum strain JGS49

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -