Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 115517 |
Name | oriT_pCIS2 |
Organism | Lactococcus cremoris subsp. cremoris UC509.9 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NC_019434 (4265..4401 [+], 137 nt) |
oriT length | 137 nt |
IRs (inverted repeats) | 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
Location of nic site | 104..105 |
Conserved sequence flanking the nic site |
GCTTGCAGTA |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_pCIS2
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGTTTTGTATTACAATGTGATAGCTTGCAGTATTTATCTTTTTATATTTCCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGTTTTGTATTACAATGTGATAGCTTGCAGTATTTATCTTTTTATATTTCCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 15950 | GenBank | NC_019434 |
Plasmid name | pCIS2 | Incompatibility group | - |
Plasmid size | 5461 bp | Coordinate of oriT [Strand] | 4265..4401 [+] |
Host baterium | Lactococcus cremoris subsp. cremoris UC509.9 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |