Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 115516
• Name: oriT_SK11|5
• Organism: Lactococcus cremoris subsp. cremoris SK11
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NC_008507 (12872..13008 [-], 137 nt)
• oriT length: 137 nt
• IRs (inverted repeats): 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC)
• Location of nic site: 104..105
• Conserved sequence flanking the nic site: GCTTGCAGTA
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 137 nt

>oriT_SK11|5
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGTTTTATATGGTCTATTTTGTT

oriT secondary structure

Predicted by RNAfold.

T4CP

tcpA_LACR_RS13385_SK11|5

• ID: 11585
• GenBank: WP_011669127
• Name: tcpA_LACR_RS13385_SK11|5
• UniProt ID: _
• Length: 358 a.a.
• PDB ID: _
• Note: Predicted by oriTfinder 2.0

T4CP protein sequence

• Length: 358 a.a.
• Molecular weight: 40785.17 Da
• Isoelectric Point: 7.4643

>WP_011669127.1 MULTISPECIES: cell division protein FtsK [Lactococcus]
MTNSQLALYLLQSLNMALGSQIEGETSYTNSFDVKVQEDGFLFLPRMPSGYIIDNDLYFKIFLIANACLY
PRYTLLKQNSAYFIPINTDDIHTQRGLFFPWKVGISKRLVINDLDFFVASQHKPYIPIMENLKLNYDNVT
SIAIAGNSGSGKSYTLTYFLSMLKPLSDLIIIDPKFDTPSRWARENKIPVIHPERNRSKSDFVAEINESL
SQTLNIIYKRQEILYDNPRHPFSHLTIVIDEVLALSEGTNKNIKDSFFSLISQIALLGRATKVHLLLVSQ
RFDYQSIPVSVREQLNVLIQIGNINKKTVQFLFPDLDPEGIVIPLGKGTGLIQIIDNEHPYQVLPLLCPT
YYTKKGIL

Protein domains

No domain identified.

Protein structure

No available structure.

Host bacterium

• ID: 15949
• GenBank: NC_008507
• Plasmid name: SK11|5
• Incompatibility group: -
• Plasmid size: 14206 bp
• Coordinate of oriT [Strand]: 12872..13008 [-]
• Host baterium: Lactococcus cremoris subsp. cremoris SK11

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -