Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 115473 |
| Name | oriT_pHL18380_1  |
| Organism | Staphylococcus aureus strain HL18380 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP080554 (11989..12227 [-], 239 nt) |
| oriT length | 239 nt |
| IRs (inverted repeats) | 216..221, 231..236 (TTTTTA..TAAAAA) 170..177, 182..189 (CTATCATT..AATGATAG) 154..159, 163..168 (TCTGGC..GCCAGA) 24..30, 44..50 (CTTTTTT..AAAAAAG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 239 nt
>oriT_pHL18380_1
AAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTC
AAGACATTAGTGTTGACTAATGTCTTTTTTGTTGATTTTTTATAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAATAAGACAGTACAGCTTTGTATGATATCACTTTAAAATACCTTAAAACCCCTGGAATTTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTTTTAGAGAAAAATTAAAAATTC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 15906 | GenBank | NZ_CP080554 |
| Plasmid name | pHL18380_1 | Incompatibility group | - |
| Plasmid size | 23058 bp | Coordinate of oriT [Strand] | 11989..12227 [-] |
| Host baterium | Staphylococcus aureus strain HL18380 |
Cargo genes
| Drug resistance gene | blaZ, mph(C), msr(A), aph(3')-III |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |