Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115452
Name   oriT_pA1P3 in_silico
Organism   Carnobacterium sp. strain ANT_P1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MN657137 (6212..6234 [+], 23 nt)
oriT length   23 nt
IRs (inverted repeats)     _
Location of nic site      14..15
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 23 nt

>oriT_pA1P3
TAAGGTATAGTGTGTTATACTTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9894 GenBank   WP_258556032
Name   mobV_H5G01_RS00040_pA1P3 insolico UniProt ID   _
Length   376 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 376 a.a.        Molecular weight: 44115.26 Da        Isoelectric Point: 8.8521

>WP_258556032.1 MobV family relaxase [Carnobacterium sp.]
MEVSRKRLEEEVVFMSMVAARMQKMKAENLIGLGNHNQRKTDNHSNQEIDVTRSHLNYDLVAQTKNYKKD
IQTFINENKASSRAVRKDAVLVSEWIVTSDTDFFKTLDQEQTKKFFEVAKNYFAENYGEENIRYAQVHVD
ERTPHMHLGIVPFTDDKRLSSKTIFNRQALKNIQEELPIELKKQGFAIERGEQGSTRSHMAVKEFKEYKE
TIHKHGELTKEVDLLEKDYQKYQVVMDTVKDSTVQTEPVLEKRGFLKREEVETDKVIISKEDFEKLHEAY
RYVPVLKKELKKAKRAERSQAEEKMMMKEQRDELKKENKQLKKMVAGAKKMISKLDDFLEKHLGISFKDA
LAEQKDNHQEEQTLESEKRGPQGPIL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(16-207)


  Protein structure



No available structure.




Host bacterium

ID   15885 GenBank   NZ_MN657137
Plasmid name   pA1P3 Incompatibility group   -
Plasmid size   7367 bp Coordinate of oriT [Strand]   6212..6234 [+]
Host baterium   Carnobacterium sp. strain ANT_P1

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -