Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 115445
• Name: oriT_pA26H3
• Organism: Planococcus sp. (in: firmicutes) strain ANT_H26
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_MN657143 (1977..2014 [+], 38 nt)
• oriT length: 38 nt
• IRs (inverted repeats): 1..6, 10..15 (CTTTAT..ATAAAG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 38 nt

>oriT_pA26H3
CTTTATGGAATAAAGTATAGTGTGCTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_H5G13_RS00020_pA26H3

• ID: 9889
• GenBank: WP_181716426
• Name: MobA_MobL_H5G13_RS00020_pA26H3
• UniProt ID: _
• Length: 525 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 525 a.a.
• Molecular weight: 59915.67 Da
• Isoelectric Point: 9.8732

>WP_181716426.1 MULTISPECIES: MobA/MobL family protein [Bacteria]
MAIFMASTKSVSRAKGQSAIAAAAYRAGDKLLDEDKEHGKTHDYQKRSGVLSADIILPSALANSEIGRAE
LWNMAERNETRKNSRVAREWLIALPHELSEQDRKDLAHDFARTLADRYQVIADCAIHVPTDKEIERGASP
LNFHAHILLTTRTATIDDDGKIVLTKDKADSEISDDDRRKKGLPRMSVEVKAVRELWELTANKVLEAKGH
HLIDSRSYKSQGIDLVPQLKMGKDATHMERKGIPTEKGLFNREIIRSNELVWNKHLDDNQKINTKADRTI
ADLSESKLFIVPTAPKPDFKQRKVTKESIDSTNDAVNKLKTIRLNREKAHQAEQERLRQQQIAAIAQKKQ
EQADQEKLEREQRREQTRERIAMETRQFNQHFKRLAQQLIKFDKPHLKKIDPDSEFGQHLVAIVAADTLM
RDLKSYQREPSTTKHQRELAEIQYERLGNTLIVQSQSALDSSKSTRHSVTQKEYTAALKGTFDAIVPEHK
QNLSQTQQERLQSVSAAINDHSYDINRSRGMTLGF

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-241)

Protein structure

No available structure.

Host bacterium

• ID: 15878
• GenBank: NZ_MN657143
• Plasmid name: pA26H3
• Incompatibility group: -
• Plasmid size: 16573 bp
• Coordinate of oriT [Strand]: 1977..2014 [+]
• Host baterium: Planococcus sp. (in: firmicutes) strain ANT_H26

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -