Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115443
Name   oriT_pA26H2 in_silico
Organism   Planococcus sp. (in: firmicutes) strain ANT_H26
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MN657142 (3333..3370 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      11..19, 26..34  (TAAAGTATA..TATACTTTA)
 1..6, 10..15  (CTTTAT..ATAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pA26H2
CTTTATGCAATAAAGTATAATGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9888 GenBank   WP_181718678
Name   mobV_H5G06_RS00015_pA26H2 insolico UniProt ID   _
Length   354 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 354 a.a.        Molecular weight: 41930.54 Da        Isoelectric Point: 9.4978

>WP_181718678.1 MobV family relaxase [Planococcus sp. (in: firmicutes)]
MSFAVVRMQKMKSPDLKGMQFHNQRERESRTNPDIDPDREHLNYDLLHQEKIDYNKQVKAIIESQKVSER
KTRKDAVLVNELLVTSDRKFFDGLDPAEQKRFFEESYNLFSERYGKQNIAYATVHNDEKTPHMHLGVVPM
RDGKLQGKNVFNRQELQWMQEEFPKHMQTLGFDVERGIASDRKHIEMSRFKALTLNEEIKTLEKETEALR
NALTASKKVDELQVSKPTLFDRTHVKLPVEDFEALKARAKATEAIESTIATHEKQFDDMFDAVVSSDRKL
DQEKSKTERLQKENSQLKQENQELRKENKTLRSKLNLLVEFAKTHLNKFKEWQKEREQEKQKILARKRDQ
ELER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-192)


  Protein structure



No available structure.




Host bacterium

ID   15876 GenBank   NZ_MN657142
Plasmid name   pA26H2 Incompatibility group   -
Plasmid size   8041 bp Coordinate of oriT [Strand]   3333..3370 [+]
Host baterium   Planococcus sp. (in: firmicutes) strain ANT_H26

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -