Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115358
Name   oriT_pPJFA-333-2 in_silico
Organism   Staphylococcus rostri strain PJFA-333
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP113109 (5308..5348 [+], 41 nt)
oriT length   41 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 41 nt

>oriT_pPJFA-333-2
CACTTTATGAATATAAAGTATAATGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9823 GenBank   WP_015382137
Name   mobV_OVY33_RS11670_pPJFA-333-2 insolico UniProt ID   L8BAH8
Length   409 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 409 a.a.        Molecular weight: 48447.75 Da        Isoelectric Point: 7.0106

>WP_015382137.1 MULTISPECIES: MobV family relaxase [Bacilli]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKTTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIERGQKGSERKNLTVPEFKKLKEEEREIKKELEIKKD
ELMAYTKENKIDKEIDITPIKEMEDVEIETDEKSLFGITKTKTVRQWTGNIVLSEKDYLKLRQKVNKGKQ
AEGKLEAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKNQIGDLKEEIKLIY
QSTKRFFKDRISDFKAFKEVFKELADSISNISREKGLDSSFKKEFDRENKKKRTKGMSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure


Source ID Structure
AlphaFold DB L8BAH8


Host bacterium

ID   15791 GenBank   NZ_CP113109
Plasmid name   pPJFA-333-2 Incompatibility group   -
Plasmid size   8025 bp Coordinate of oriT [Strand]   5308..5348 [+]
Host baterium   Staphylococcus rostri strain PJFA-333

Cargo genes

Drug resistance gene   optrA, ant(9)-Ia
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -