Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115355
Name   oriT_pNM11 in_silico
Organism   Planococcus citreus
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_019558 (2172..2209 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      11..19, 26..34  (TAAAGTATA..TATACTTTA)
 1..6, 10..15  (CTTTAT..ATAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pNM11
CTTTATGGAATAAAGTATAATGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9820 GenBank   WP_172685220
Name   mobV_HTA69_RS00015_pNM11 insolico UniProt ID   _
Length   354 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 354 a.a.        Molecular weight: 42039.55 Da        Isoelectric Point: 9.3243

>WP_172685220.1 MobV family relaxase [Planococcus citreus]
MSFAVVRMQKMKSPDLKGMQFHNQRERESRTNPDIDPDRAHLNYDLLHQEKIDYNQQVKAIIESQKVSER
KTRKDAVLVNELLVTSDRKFFDRLDPAEQKRFFEESYNLFSERYGQQNIAYATVHNDEKTPHMHLGVVPM
RDGKLQGKNVFNRQELQWMQEEFPKHMQTLGFDVERGIASDRKHIEMSRFKALTLNEEIKTLEKETEALR
NALTASKKVDELQVSKPTLFDRNHVKLPVEDFEALKARAKATEAIESTIATHEKQFDDMFDAVVSSDRKL
DQEKTKTERLQKENSQLKQENQELRKENKTLRSKLNLLVEFTKTQLDKFKEWQKEREQEKQKNMARKRDQ
ELER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-192)


  Protein structure



No available structure.




Host bacterium

ID   15789 GenBank   NC_019558
Plasmid name   pNM11 Incompatibility group   -
Plasmid size   11383 bp Coordinate of oriT [Strand]   2172..2209 [+]
Host baterium   Planococcus citreus

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -