Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   115332
Name   oriT_pNY7583-catB3 in_silico
Organism   Pseudomonas aeruginosa strain NY7583
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP120882 (4304..4414 [-], 111 nt)
oriT length   111 nt
IRs (inverted repeats)      71..78, 81..88  (CACCATGC..GCATGGTG)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 111 nt

>oriT_pNY7583-catB3
CCGGCTGGCCCCGCAGGGCAGGATGCCCCGTTGAGCGCCGCAGGCGCGAATAAGGGGAAGTGAAGAGGATCACCATGCTTGCATGGTGGGCCTACTTCACACATCCTGCCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   9793 GenBank   WP_083563946
Name   traI_P4G01_RS33870_pNY7583-catB3 insolico UniProt ID   _
Length   609 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 609 a.a.        Molecular weight: 66600.35 Da        Isoelectric Point: 10.5829

>WP_083563946.1 TraI/MobA(P) family conjugative relaxase [Pseudomonas aeruginosa]
MIAKHVPMRSLGKSDFAGLVRYVTDAQSKDHRLGQVQVTNCAADTVRDAITEVLATQQANTRAKGDKTYH
LIVSFRAGEQPSADTLRQIEARICDGLGLGEHQRVSAVHNDTDNLHIHIAINKIHPTRGTMQEPYYSHRA
LADLCATLERDYGLERDNHEPRQRGAAARAGDLEQHAGVESLVGWIKRECLDEIKGAASWAELHQVMRDN
GLALRARGNGLVIEAGDGTIIKASTLARDLSKPALEKRLGTFEASPERQAAPAQRNYQKGRPMRLRGGLD
TTELYARYKGAQQTLTAARAGVLAEAKRRKDRAIEHAKKAAATRRAAIKHLTDGRLTKKLLYAQASAALR
ADLDAIHKRHDQERAAIYNEHRRRPWADWLKQQATAGDGQALDALRAREAAQGLKGDTIQGDGQAKPGHA
PVIDSITKKGTIIYRAGSSAVRDDGERLAVSSQADRAGVAAALRLAMERYGERITVSGSVEFKAAVIRAA
VDAQLPITFADPALESRRQAEATKAQAKRRPGVPPVGQEPPPHRRHGLRTLGQLDGLHIEGEAQRPAQAP
TQATPTPPPAKVQQPARPALSELEQREARLRAQMEAKKAKRQEGKKRGR

  Protein domains


Predicted by InterproScan.

(12-250)

(423-511)


  Protein structure



No available structure.




Auxiliary protein


ID   5745 GenBank   WP_054471493
Name   WP_054471493_pNY7583-catB3 insolico UniProt ID   A0A120LKZ5
Length   125 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  Auxiliary protein sequence


Download         Length: 125 a.a.        Molecular weight: 13520.32 Da        Isoelectric Point: 7.9653

>WP_054471493.1 MULTISPECIES: conjugal transfer transcriptional regulator TraJ [Pseudomonadota]
MEANENKVTRKGSTPIKVYCLPDERAAIEANAQAAGMSTSAYLLAVGQGYQVKGVTDFENVRDLVRVNGD
LGRLGGLLKLWLTDDPRTARFGDDTIRALLARIEATQDKISTIAESVVRPRGGQS

  Protein domains



No domain identified.



  Protein structure


Source ID Structure
AlphaFold DB A0A120LKZ5


Host bacterium


ID   15766 GenBank   NZ_CP120882
Plasmid name   pNY7583-catB3 Incompatibility group   -
Plasmid size   28293 bp Coordinate of oriT [Strand]   4304..4414 [-]
Host baterium   Pseudomonas aeruginosa strain NY7583

Cargo genes


Drug resistance gene   aph(6)-Id, aph(3'')-Ib, blaOXA-101, aph(3')-XV, catB3, qacE, sul1
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -