Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115313
Name   oriT_SAP008A in_silico
Organism   Staphylococcus sp. 693-2
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_013371 (8300..8400 [+], 101 nt)
oriT length   101 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 101 nt

>oriT_SAP008A
TCATCAGCCGAAACTTTGAATATGAGTGTGCCGAATTTCGTTAAGAAAAAGGCACATGGGAGTCGATTGGTAGCGCCCAAATTGGATAAAGAGACGCGACA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9783 GenBank   WP_012817956
Name   Relaxase_HHF12_RS00055_SAP008A insolico UniProt ID   D2J5V9
Length   323 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 323 a.a.        Molecular weight: 37422.51 Da        Isoelectric Point: 8.8492

>WP_012817956.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus sp. 693-2]
MATTKLGNTKSASRAINYAEKRAEEKSGLNCDVDYAKSAFKATRSLYGKEDGIQAHTIIQSFKPNEVTPE
QCNQIGLELAEKIAPNHQVAVYTHTDKEHYHNHIVINSVDLETGNKYQSNKKQRELVKQENDNICREHGL
SVPEKQRETRYTQAEYEIGKEAQKGNKPIPWKEQIRMVIDQTQAINYEQLGADLLQNGIKIERITEKTIT
YKHLEEDKKVRGSKLGEKYDKGGLEHGYDGRIRRKEQSREQENTRETGPDRKATQSEWDNFANNTRKLEH
DRRSSEAARLAHEKSIRDKEEREREREQAQRTSKKSRGFDLEL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(8-238)


  Protein structure


Source ID Structure
AlphaFold DB D2J5V9


Host bacterium

ID   15748 GenBank   NC_013371
Plasmid name   SAP008A Incompatibility group   -
Plasmid size   9968 bp Coordinate of oriT [Strand]   8300..8400 [+]
Host baterium   Staphylococcus sp. 693-2

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -