Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 115299 |
Name | oriT_SAP015A |
Organism | Staphylococcus aureus |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NC_013289 (7216..7455 [-], 240 nt) |
oriT length | 240 nt |
IRs (inverted repeats) | 217..222, 232..237 (ATTTTA..TAAAAT) 171..178, 183..190 (CTATCATT..AATGATAG) 155..160, 164..169 (TCTGGC..GCCAGA) 26..32, 44..50 (TTTTTTA..TAAAAAA) 1..7, 20..26 (AAGACAT..ATGTCTT) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 240 nt
>oriT_SAP015A
AAGACATTAGTGATAACTGATGTCTTTTTTTATTGTTTTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTC
AAGACATTAGTGATAACTGATGTCTTTTTTTATTGTTTTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 15734 | GenBank | NC_013289 |
Plasmid name | SAP015A | Incompatibility group | - |
Plasmid size | 27068 bp | Coordinate of oriT [Strand] | 7216..7455 [-] |
Host baterium | Staphylococcus aureus |
Cargo genes
Drug resistance gene | blaZ, mph(C), msr(A), aph(3')-III |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | AcrIIA21 |