Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115255
Name   oriT_pPCZ1 in_silico
Organism   Planococcus sp. ZOYM
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_013539 (3292..3313 [+], 22 nt)
oriT length   22 nt
IRs (inverted repeats)     _
Location of nic site      12..13
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 22 nt

>oriT_pPCZ1
AAGTCTAGTGTGTTATACTTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9747 GenBank   WP_173096625
Name   mobV_HS394_RS00025_pPCZ1 insolico UniProt ID   _
Length   462 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 462 a.a.        Molecular weight: 53369.77 Da        Isoelectric Point: 7.7071

>WP_173096625.1 MobV family relaxase [Planococcus sp. ZOYM]
MSYSIIRVQKMNGQAIKGMQIHNQREKDSQTNPDIRKEDLHLNYDLIHGQEKIDYKQEIQQVISENVKSD
KKIRKDAVLVSEFLITSDTTFFDNLSPDEQKRYFETAKDFIADRYGQQNVIYATVHNDEKTPHMHVGIVP
VTEDGRLSAKEVIGNRMALVKLQDAFNAHVKAHGFDLERGLSRKGRKHVDMAKFKQLTAFEAEKQAMATY
EQTVSKIKAIEEKTKALEDLPDPTRMVGRAMLKSEDYDTLVNYATNGAVAEVEVMDLQRKLAEKDQEIMQ
LKNEMQDGQDKIRKNYAGIEYRNEEILSNLEKLTDEKANKKAEKIFKSMDVVEKHEEAVIEYNKLRAEYK
IVYADRERLKSENKSLARSNAGLKAENKTLEEDKSVLQNRIIELTNEFAAWKDRAKMALHNQFKRIVIRL
KAVGIAPDKLKGLAQVEEKFVAASFHEIENPKKSEKFQEMER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-196)


  Protein structure



No available structure.




Host bacterium

ID   15691 GenBank   NC_013539
Plasmid name   pPCZ1 Incompatibility group   -
Plasmid size   4738 bp Coordinate of oriT [Strand]   3292..3313 [+]
Host baterium   Planococcus sp. ZOYM

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -