Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115145
Name   oriT_2T18|unnamed3 in_silico
Organism   Chitinibacter bivalviorum strain 2T18
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP058629 (16249..16387 [+], 139 nt)
oriT length   139 nt
IRs (inverted repeats)      28..34, 38..44  (ACATGGC..GCCATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 139 nt

>oriT_2T18|unnamed3
CGAATGGGCAGGCGGGGATTGGCAGGAACATGGCGTAGCCATGTGTATGACAATCCGCATCCTGTTAAGCTCAACCACTCTACTATCATATCAGCAGTTTAGGTGCACGGGACGCACTTTGCAACAAGCATAAAAGGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9682 GenBank   WP_179358571
Name   traI_HQ393_RS17235_2T18|unnamed3 insolico UniProt ID   _
Length   889 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 889 a.a.        Molecular weight: 101762.28 Da        Isoelectric Point: 9.7187

>WP_179358571.1 TraI/MobA(P) family conjugative relaxase [Chitinibacter bivalviorum]
MIVKKVPNSKTKHKTGSIRDLADYIREPHNQNPDEKVLYANGRGFLCDGHAAQREEMVALAAESVRSKNP
VNHYIMSWREGEQPSSEQVEEAVSIFMEELGWKDHQAIYGLHKDTDNIHLHIAINRVHPEKLKIVEINRG
FDIEMAHKAIARIEHAQGWQREQNGRYQVLENGELGRAPYDPEKPRQPDQKKRDMENRTGEKSAHRIAIE
DGAAIIKQAQSWEQLHRELAAKGMRYEKTGSGATVFVGDVGVKASDVDRNASLAKMQKRLGEYQPAPQHQ
QVAQREPEPIKPDVPGWKDYITGRKAHYAAKNAAKLALDKQQEQERKQLAEQQKARRDELMRGNWKGKGE
VLNAMRSVIAAEQAAEKAALKEKHQKQREQWRQQFRPYPDLEQWQRMQKSPELAEQWRHRASEPQRIEGD
RSEPPTVRDIRAYVPEIVGQQVHYSRKDEAGRGGGVSFVDKGKSIDIHDWRNRDSTLAALQLSAQKWGSF
TVTGCDEYKTMCVKLAAEHGFKITNSELQESIQRERQRIQQERAQAMKSEQLKQFERYAEAVGAERYRVT
SIKMREDGGKQTFILDKKDGITRGFTPQEIEQRTPEMQRLQRRGENLYYTPLSDKKHHILIDDMSREKLE
RLIKDGYQPAAVLESSPGNYQAIITVPKLGTVHDKDVGNRLSDALNREYGDPKLSGAIHPHRAPGYENRK
PKHQREDGSYPEVRLLKAERRECVKALALSSQIDAEYQRQAALKAQQPERSKAKPALELAAASGSAIDAY
QRHYRDVLKRQQGGEVDLSRVDSMIAVRMRVTGHDQAAIEGAIRQCAPATRQKDEGRDWNDYAQRTARYA
YSAAGDRQAAELGKYRQQWEKLEGREPVRQQEQAKAQKIERDNSPGMSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(17-273)

Large polyvalent protein-associated domain 7 (LPD7)

(442-526)

RepB DNA-primase from phage plasmid (RepB_primase)

(547-806)


  Protein structure



No available structure.




Host bacterium

ID   15580 GenBank   NZ_CP058629
Plasmid name   2T18|unnamed3 Incompatibility group   -
Plasmid size   30683 bp Coordinate of oriT [Strand]   16249..16387 [+]
Host baterium   Chitinibacter bivalviorum strain 2T18

Cargo genes

Drug resistance gene   tet(C), aph(3')-Ia, aph(3'')-Ib, aph(6)-Id
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -