Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 115144
• Name: oriT_D17|unnamed2
• Organism: Deefgea piscis strain D17
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP054145 (8218..8251 [+], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): 1..7, 11..17 (GTTTCTC..GAGAAAC)
• Location of nic site: 28..29
• Conserved sequence flanking the nic site: GTGCGCCTTC
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_D17|unnamed2
GTTTCTCGAAGAGAAACAACTAAGTGCGCCTTCC

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_HQN60_RS15930_D17|unnamed2

• ID: 9681
• GenBank: WP_173534799
• Name: MobA_MobL_HQN60_RS15930_D17|unnamed2
• UniProt ID: _
• Length: 473 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 473 a.a.
• Molecular weight: 53160.29 Da
• Isoelectric Point: 6.8264

>WP_173534799.1 MobA/MobL family protein [Deefgea piscis]
MASYHCSVKVGGKGKAAAHAAYISREGKYSDSPRYEDLECSGYGNMPKWAEHNPAHFWQSADEYERANGA
TYREIEVALPRELTPDQRRELVEDFVQNELGKLHAYQWAIHTPKAALEGAEQPHAHIMYSERTNDEIERD
PSQYFKRYNAKNPERGGCKKDSAGTEERLLATRQSWAEIQNEHLARYGHAARVDHRSLKEQGIDREPEFH
LGGIGVRKLAATDISALLVRRAAEGELERANRAVGLIDVSGNLALAKAEREQKQSEEAQASADKIRLENE
VRDFARQATAQFKQDLAAQALAEQRAQAERQALEAAQRVEQQRQRLEQEKQRQLDEKKQALREAAIQRVK
DLKDVLLRHRVGGPSPAVYVNSETIYAEVALDALKAAKLQPEQVDWKRVDFDAASSALQQRRPQAEVIAA
ITACSPRCVNADSAEKVPIWVAQLAAQIEPQRKPKPEPTQDQEPPAPSPGWSR

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (42-212)

Protein structure

No available structure.

Host bacterium

• ID: 15579
• GenBank: NZ_CP054145
• Plasmid name: D17|unnamed2
• Incompatibility group: -
• Plasmid size: 15571 bp
• Coordinate of oriT [Strand]: 8218..8251 [+]
• Host baterium: Deefgea piscis strain D17

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -