Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115103
Name   oriT_pPMRA301 in_silico
Organism   Lactobacillus amylovorus strain PMRA3
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP029755 (81903..82082 [-], 180 nt)
oriT length   180 nt
IRs (inverted repeats)      18..23, 30..35  (AGGAAA..TTTCCT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 180 nt

>oriT_pPMRA301
GGGTAAAGGAAGAATTGAGGAAATAGAGGTTTCCTGTATTGAACCATATAGTCAAGTAATGTTCCATCTGGGATACGAGTTTGATGAAAATGATGCACATGATGTGAAGTTATTGTGTGAGACATTTCATATCGAAATTCCAAATGAGTATAGATAACTGCAAATAACAGTTTGTAGGGG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9659 GenBank   WP_180936779
Name   Replic_Relax_DM298_RS10450_pPMRA301 insolico UniProt ID   _
Length   652 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 652 a.a.        Molecular weight: 74890.97 Da        Isoelectric Point: 9.7552

>WP_180936779.1 hypothetical protein [Lactobacillus amylovorus]
MINFKNNFKTISLTDDQFLLIKQIANLGFVTKPQLEMIYSIIKNKPTSISNHVLNKLVNKDKVLNRIKSN
ESQNRIKQIAYVISRYGRNLLSAYHYFYRDPRSFGINFHNLQANEVVIQALYASNFKPTALGSNNSSLRF
NDEEKTVSITNSFGSTFTLPTFDVPFYDKKVSKPVVSRLNEDYFIKNADLARLPELLTEGLLVGGITDKK
LRLSLDSKAQSTFLLKKGNEDDDWFVQDLSFLKNPRLLRYISFFKPFLPKKLIEEMQLYQGLTKTSGLRG
RGAHVKLVKISNFYQQLLKSSNYYYFLLSLYQQLLNITNKKQLLATVGNYWQQLATVNNNYQELVTFTNS
TLKKDTLDKNLAIIKPIGLLPFRVGSDFDDRVQRASLALRGFNYHLKLTEFDTRPFNAQLGITPTKKDTT
AFEADTMITFKRNNKVQSVFIELDNRTEGSATQAQKILNYIEYANQHPNDNFLLAIVSADGSLPTNKLKQ
YTYPDQHLGVLVDKMLRIRVGEGQQTEDGRLVKATPYLIELYERCPNLKIIFAGLSEAPMRIAEFIVNAN
HNIDYISSAFVLARRISKDTQWDVTFDPTIEVKEAIKNTPALVDTTYNQLHYNVSGIYGYFNYSKLYVIN
IMSFYIYLCAFVSCLMYNTSID

  Protein domains



No domain identified.



  Protein structure



No available structure.




Host bacterium

ID   15538 GenBank   NZ_CP029755
Plasmid name   pPMRA301 Incompatibility group   -
Plasmid size   84225 bp Coordinate of oriT [Strand]   81903..82082 [-]
Host baterium   Lactobacillus amylovorus strain PMRA3

Cargo genes

Drug resistance gene   tet(W), ant(6)-Ia, lnu(C)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -