Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 115073
• Name: oriT_pLP41P-2
• Organism: Lactiplantibacillus plantarum strain 41P
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP075332 (18838..18865 [-], 28 nt)
• oriT length: 28 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 28 nt

>oriT_pLP41P-2
AATTTTTAGTGGAGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_LP41P_RS15340_pLP41P-2

• ID: 9644
• GenBank: WP_053266970
• Name: Relaxase_LP41P_RS15340_pLP41P-2
• UniProt ID: _
• Length: 389 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 389 a.a.
• Molecular weight: 44208.96 Da
• Isoelectric Point: 9.9737

>WP_053266970.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactobacillaceae]
MATTHIKRSTSASRLVNYAEKRAIKKDGLNLDIQYAKSEFKQVRAVYGNPGKTQAYASRIAFSPLEFNPQ
DPHDQTTVLAVAKEVYAQAYPNQQVALYEHADTDSLHVHAVIGAINLETGQKMHGNWHQYRDHLVHITDQ
VCQEHGLMVTRPDPNRHEKRSMAEIKLRAKQQPTWKDQIRQAVDHTMQNPLIRDFQAFQDDLKQQAVKVW
ERGKNLTYQLLGTNYKSRGTKLGLDYEKETIFNELASRQNQTRTNQQPERTVNPTIDPAQSDHSRTPELP
GHSDSTASHSQNVPRSTTSSDRTDRPTSQPTVSDDLKQLRQQQRQLAGPIKTDLTKRLRSIPKADQPDQS
GKSDRAQTNSNRTSQKQPAPQPTQRPSEPDHSRDDGPSR

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-246)

Protein structure

No available structure.

Host bacterium

• ID: 15508
• GenBank: NZ_CP075332
• Plasmid name: pLP41P-2
• Incompatibility group: -
• Plasmid size: 19279 bp
• Coordinate of oriT [Strand]: 18838..18865 [-]
• Host baterium: Lactiplantibacillus plantarum strain 41P

Cargo genes

• Drug resistance gene: ClpL
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -