Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115054
Name   oriT_MB-3u-09|unnamed3 in_silico
Organism   Planococcus sp. MB-3u-09
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CM009126 (2932..2969 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..6, 10..15  (CTTTAT..ATAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_MB-3u-09|unnamed3
CTTTATGCAATAAAGTATAGTGTGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9635 GenBank   WP_101189113
Name   mobV_CXF77_RS00395_MB-3u-09|unnamed3 insolico UniProt ID   _
Length   354 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 354 a.a.        Molecular weight: 42073.74 Da        Isoelectric Point: 9.4977

>WP_101189113.1 MULTISPECIES: MobV family relaxase [unclassified Planococcus (in: firmicutes)]
MSFAVVRMQKMKSPDLKGMQFHNQRERESRTNPDIDPDREHLNYDLLHQEKIDYNKQVKDIIESQKVSER
KTRKDAVLVNELLVTSDRKFFEGLDPAEQKRFFEESYNLFSERYGKQNIAYATIHNDEKTPHMHLGVVPM
RDGKLQGKNVFNRQELQWMQEEFPKHMQTLGFDVERGIASDRKHIEMSRFKALTLNEEIKTLEKETEALR
NALTASKKVDELQVSKPTLFDRNHVKLPVEDFEALKARAKATEAIESTIATHEKRFDDMFDAVVSSDRKL
DQEKSKTERLQKENSQLKQENQELRKENKTLRSKLNLLVEFAKMHLNKFKEWQKEREQEKQKILARKRDQ
ELER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-192)


  Protein structure



No available structure.




Host bacterium

ID   15489 GenBank   NZ_CM009126
Plasmid name   MB-3u-09|unnamed3 Incompatibility group   -
Plasmid size   6800 bp Coordinate of oriT [Strand]   2932..2969 [-]
Host baterium   Planococcus sp. MB-3u-09

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -