Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   115006
Name   oriT_pELF1 in_silico
Organism   Enterococcus faecium strain AA708
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LC495616 (136915..137091 [-], 177 nt)
oriT length   177 nt
IRs (inverted repeats)      91..97, 107..113  (ATTTTTT..AAAAAAT)
 92..98, 105..111  (TTTTTTG..CAAAAAA)
 26..34, 37..45  (CACCTTCCT..AGGAAGGTG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 177 nt

>oriT_pELF1
AAAGAGCATAAGGGAAAACTGATAGCACCTTCCTACAGGAAGGTGGCTAAGTCGGCTGTGCCAACTGGTTTTCTTACAAAACAACCTTATATTTTTTGATATCACAAAAAAATCCATTTTGGACCTATTTTCGGTCATAATATAGTACCTACTTTTGGTCATAGTTTCGTCCGTAGT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   11208 GenBank   WP_002320854
Name   tcpA_EfmAA708_RS16010_pELF1 insolico UniProt ID   _
Length   458 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 458 a.a.        Molecular weight: 50784.68 Da        Isoelectric Point: 9.1998

>WP_002320854.1 MULTISPECIES: FtsK/SpoIIIE domain-containing protein [Enterococcus]
MAMKLLEKVKKRAEKAESILLDKEPNIKLNGKFSVNMLNTKAKDPTDAIFGIKPDGTIAHFCISEMPHML
VAGTTGSGKSVLLNEILVTAMCHSTPDELKIGIVDPKRVEFGRYKKLPFMLADPITDMDEAYDFFEYLVI
LMHERYKLMEKAGLQNITLYNEYAEKNGLDRFPYVILLVDEYSQLVGTHKEVEGLIVQLGQMARAAGIHV
ILATQSPRSTVVTGIIKANFPSRVCLMVASDLESRIVLDEGGGESLSPKGDMIIKLVNGSMVRAQGAYIS
NKEIETIFNHLRNTMPEPEYVDYRAIVAESRGEGGEDEDFGGIGKAPVRKSAKRNLNTPLANSSSKEPSI
EKKSTFALKLEKNKEEKEKQGAKTLEKLQAEKLEKVLKALDKADSEPQTSNNTNNEQPISSKTKPKTTDP
KVSVNVTITTDKSEKKQVNGTTSPIMQKMLKAKKQVHK

  Protein domains


Predicted by InterproScan.

FtsK/SpoIIIE family (FtsK_SpoIIIE)

(59-186)

  Protein structure



No available structure.




Host bacterium

ID   15441 GenBank   NZ_LC495616
Plasmid name   pELF1 Incompatibility group   -
Plasmid size   143316 bp Coordinate of oriT [Strand]   136915..137091 [-]
Host baterium   Enterococcus faecium strain AA708

Cargo genes

Drug resistance gene   VanHAX, VanHMX, ant(6)-Ia, aph(3')-III, erm(B)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -