Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114997 |
| Name | oriT_pBN62-17kb-1  |
| Organism | Lactococcus sp. bn62 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP120420 (6502..6638 [+], 137 nt) |
| oriT length | 137 nt |
| IRs (inverted repeats) | 85..91, 93..99 (TATTACA..TGTAATA) 21..28, 42..49 (AAAAGGGG..CCCCTTTT) 25..30, 39..44 (GGGGAA..TTCCCC) |
| Location of nic site | 104..105 |
| Conserved sequence flanking the nic site |
GCTTGCAGTA |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 137 nt
>oriT_pBN62-17kb-1
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTAATAGCTTGCAGTATTTATGGTTTTATATTTTCTATTTTGTT
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTAATAGCTTGCAGTATTTATGGTTTTATATTTTCTATTTTGTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 9603 | GenBank | WP_284071381 |
| Name | Relaxase_P3G65_RS11765_pBN62-17kb-1 |
UniProt ID | _ |
| Length | 503 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 503 a.a. Molecular weight: 58727.47 Da Isoelectric Point: 8.3017
>WP_284071381.1 relaxase/mobilization nuclease domain-containing protein [Lactococcus sp. bn62]
MTVINMPNKSKGTLHSKQGLSSALKYITDPQKTNNGELVSGQNINIPSNAYDEMLLTREMAILAGNQPKE
NERFGFHFVQSFSPEDNLTPEQVHEIGLKTMKTYLGESAEFVIATHTDKEHLHNHIILNATNPKTLKKFQ
QSKSQLEELKEISDVISKEYGCKIIDRNLKNSHKKYQVYLAKNSYRKEIKSKIKFLLSHASNWTDFKNKA
TALGLIVDDKGKYTTYQLSGTSQERKVRDRSLKNQAFMKEAISERLKENEVFYTESEVKELWEENQTIQD
KEQETEIEMLIEDWQVEKETADYLYVNINIGLERAQRKTTIKIPARCVDKLENGNYQVFLKKQDRFYFVD
SKNPENNKIMLGKTVVKNLQNQSGSVPLYSNNAKIKLKQLFNEFDFLISKGLDFDTSFEAIGKELEQTYY
QTESILENLDKKILEYVEENKAYARPNTRILKTIENLQKERTDLHKTLKQVEKEMLYYDKSVDRYEDYQQ
EHTKNKSQHSPRL
MTVINMPNKSKGTLHSKQGLSSALKYITDPQKTNNGELVSGQNINIPSNAYDEMLLTREMAILAGNQPKE
NERFGFHFVQSFSPEDNLTPEQVHEIGLKTMKTYLGESAEFVIATHTDKEHLHNHIILNATNPKTLKKFQ
QSKSQLEELKEISDVISKEYGCKIIDRNLKNSHKKYQVYLAKNSYRKEIKSKIKFLLSHASNWTDFKNKA
TALGLIVDDKGKYTTYQLSGTSQERKVRDRSLKNQAFMKEAISERLKENEVFYTESEVKELWEENQTIQD
KEQETEIEMLIEDWQVEKETADYLYVNINIGLERAQRKTTIKIPARCVDKLENGNYQVFLKKQDRFYFVD
SKNPENNKIMLGKTVVKNLQNQSGSVPLYSNNAKIKLKQLFNEFDFLISKGLDFDTSFEAIGKELEQTYY
QTESILENLDKKILEYVEENKAYARPNTRILKTIENLQKERTDLHKTLKQVEKEMLYYDKSVDRYEDYQQ
EHTKNKSQHSPRL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 15432 | GenBank | NZ_CP120420 |
| Plasmid name | pBN62-17kb-1 | Incompatibility group | - |
| Plasmid size | 17250 bp | Coordinate of oriT [Strand] | 6502..6638 [+] |
| Host baterium | Lactococcus sp. bn62 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |