Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   114982
Name   oriT_pEh25_5 in_silico
Organism   Enterobacter hormaechei strain Ehh_25
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP126751 (20301..20399 [-], 99 nt)
oriT length   99 nt
IRs (inverted repeats)      77..82, 89..94  (AAAAAA..TTTTTT)
 77..82, 88..93  (AAAAAA..TTTTTT)
 31..38, 41..48  (AGCGTGAT..ATCACGCT)
 17..23, 35..41  (TAAATCA..TGATTTA)
Location of nic site      59..60
Conserved sequence flanking the
  nic site  
 
 GGTGTATAGC
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 99 nt

>oriT_pEh25_5
TTTGTTTTTTTCCTTTTAAATCAGTGGTATAGCGTGATTTATCACGCTGCGTTAGGTGTATAGCAGGTTAAGGGATAAAAAATCATCTTTTTTTGGTAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   15417 GenBank   NZ_CP126751
Plasmid name   pEh25_5 Incompatibility group   IncR
Plasmid size   59233 bp Coordinate of oriT [Strand]   20301..20399 [-]
Host baterium   Enterobacter hormaechei strain Ehh_25

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -