Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114967 |
| Name | oriT_JXNC-3B|unnamed1  |
| Organism | Clostridium perfringens strain JXNC-3B |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP102303 (43481..43628 [+], 148 nt) |
| oriT length | 148 nt |
| IRs (inverted repeats) | 131..136, 140..145 (ATACAT..ATGTAT) 115..121, 135..141 (ATTATAT..ATATAAT) 117..123, 127..133 (TATATAT..ATATATA) 119..125, 127..133 (TATATAT..ATATATA) 121..126, 128..133 (TATATA..TATATA) 110..116, 120..126 (TATATAT..ATATATA) 110..116, 118..124 (TATATAT..ATATATA) 110..115, 117..122 (TATATA..TATATA) 18..23, 26..31 (TTTAAA..TTTAAA) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 148 nt
>oriT_JXNC-3B|unnamed1
GGAACTTTGCAAGGAACTTTAAAAATTTAAATTGATATAGAAGTTCCCTGTATTAATATTAGTGTTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATTGG
GGAACTTTGCAAGGAACTTTAAAAATTTAAATTGATATAGAAGTTCCCTGTATTAATATTAGTGTTTTAAAGAGATATATCATTATTAGTTCCTTATCGTATTATAGAGTATATATTATATATATAATATATACATATAATGTATTGG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
T4CP
| ID | 11182 | GenBank | WP_257269578 |
| Name | tcpA_NQ194_RS15585_JXNC-3B|unnamed1 |
UniProt ID | _ |
| Length | 527 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 527 a.a. Molecular weight: 60211.44 Da Isoelectric Point: 6.1216
>WP_257269578.1 FtsK/SpoIIIE domain-containing protein [Clostridium perfringens]
MSSDWEKKVNQEVENGLNAIINEIANVLKIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYISTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKVGLDLNKEKLIDNDLMNSVNEKFEIKE
VKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
MSSDWEKKVNQEVENGLNAIINEIANVLKIFFFRVGLGFKKSWKNKKLFIGFFLSFLIPIAARIKSDYFL
VDTKFYFKIIYFSTFIAPLFYMVIVSFVKNKEDKRNAEYRLAFEQLNFVGADSKTPILKSFIEDKGTRID
EITFESMIPIETWKSYIPQLQTSLNISIISIEQGASKRIVIIKSMAGDAKIPKYLPWDDKYIEEQEGVVV
VGQTFSGNIKIDLNKSPHILSAGETGSGKSVILRCILWQLLKQGAIAYMVDFKGGVEFGLEYEKVGQVIT
EVDAAEKLFKYLVDENAKRLKLLRESGSKNIGEYNKKFEGEELKRIIVVIDELAELMDKTGVDDETRAKL
VRIEGYISTLARLSRATGINLCIGVQRPDAKVITGQIKNNVPVRICGRFADSKASEIVLSNTKAKDLPEV
KGRFLFKLGADTVQFQAFYFDDDKHFIPNKILKLRKDEIEDKKVGLDLNKEKLIDNDLMNSVNEKFEIKE
VKSMDSNIENEDDSKFENFEEQNKTENLKSTINDDYE
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 15402 | GenBank | NZ_CP102303 |
| Plasmid name | JXNC-3B|unnamed1 | Incompatibility group | - |
| Plasmid size | 75433 bp | Coordinate of oriT [Strand] | 43481..43628 [+] |
| Host baterium | Clostridium perfringens strain JXNC-3B |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |