Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 114789
• Name: oriT_pUnnamedse13
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ13
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP065055 (1845..1885 [+], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_pUnnamedse13
CACATTTACGAAGTAAAGTATAGTACGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_I2432_RS10220_pUnnamedse13

• ID: 9475
• GenBank: WP_249093484
• Name: mobV_I2432_RS10220_pUnnamedse13
• UniProt ID: _
• Length: 490 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 490 a.a.
• Molecular weight: 57295.12 Da
• Isoelectric Point: 5.5284

>WP_249093484.1 MobV family relaxase [Streptococcus equi]
MKVGNLGGAYRHNERVFENHSNKDIDTSRSHLNYELTDRDRSVSYEKQIKDYVNEKKSSKRAIRKDAVLC
DEWIITSDKDFFERLDQEQTRAFFETAKNYFAERYGLENIAYASVHLDESTPHMHLGVVPMVDGKLSSKA
VFTREELKAIQEELPKYMNEQGFELSRGQLGSDKKHLSVADYKAKIGKEALNKELLGLGAPRYWHKEEDR
PATAEEIAGYESLASLFAGEEMKLREATLEERFTWLDSHRNDLKGDLSHLEELVDKKIEEYTRIDSETSE
RLSELSELNSKVKDREKELRGLESDSERLSDKVVRLEKEHRETTQLLVEQNRNLRKISFQDLDRRRIAED
LHEELEKATPKLFGGSFNFTADFVGRLKTFMSEVVEKLEQAINQNEVLRKALEGMKQAKESAERELLQEE
WKTQRLETENQNLRQENKELKVSKNLLEDIQEVITEKEVSSLNKRLDELRESRMASRRRYEPEHSKGRSI

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-184)

Protein structure

No available structure.

Host bacterium

• ID: 15224
• GenBank: NZ_CP065055
• Plasmid name: pUnnamedse13
• Incompatibility group: -
• Plasmid size: 4723 bp
• Coordinate of oriT [Strand]: 1845..1885 [+]
• Host baterium: Streptococcus equi subsp. zooepidemicus strain SEZ13

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -