Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114773 |
| Name | oriT_pSTA-BLR-MRSA-DV-1  |
| Organism | Staphylococcus aureus strain BLR-DV |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_CP058313 (987..1225 [+], 239 nt) |
| oriT length | 239 nt |
| IRs (inverted repeats) | 170..177, 182..189 (CTATCATT..AATGATAG) 153..159, 163..169 (GTCTGGC..GCCAGAC) 24..31, 43..50 (CTTTTTTA..TAAAAAAG) 36..41, 44..49 (TTTTTT..AAAAAA) 1..7, 20..26 (AAGACAT..ATGTCTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 239 nt
>oriT_pSTA-BLR-MRSA-DV-1
AAGACATTAGTGATGACTGATGTCTTTTTTATTGATTTTTTGTAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAACTGTGACACTACAGCTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTGGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTCTTAGAGAAAAATTAAAAATTC
AAGACATTAGTGATGACTGATGTCTTTTTTATTGATTTTTTGTAAAAAAGTACTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAACTGTGACACTACAGCTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTGGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTACGGAGTTCTTAGAGAAAAATTAAAAATTC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 15208 | GenBank | NZ_CP058313 |
| Plasmid name | pSTA-BLR-MRSA-DV-1 | Incompatibility group | - |
| Plasmid size | 2979 bp | Coordinate of oriT [Strand] | 987..1225 [+] |
| Host baterium | Staphylococcus aureus strain BLR-DV |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |