Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114757
Name   oriT_RE225|unnamed in_silico
Organism   Limosilactobacillus reuteri strain RE225
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP130469 (1020..1047 [+], 28 nt)
oriT length   28 nt
IRs (inverted repeats)      1..9, 16..24  (TAAAGTATA..TATACTTTA)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 28 nt

>oriT_RE225|unnamed
TAAAGTATAGTGGGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9458 GenBank   WP_153706781
Name   mobV_Q3A95_RS11130_RE225|unnamed insolico UniProt ID   _
Length   358 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 358 a.a.        Molecular weight: 42337.14 Da        Isoelectric Point: 9.8363

>WP_153706781.1 MobV family relaxase [Limosilactobacillus reuteri]
MSHYAVATMKKMKAENLSGMLRHDFRETKNHKNKDIDPNKSDQNIELVADHKLHKQDIVDYINKCRRSSR
KLRRDAVMVDEWIISSDREFFDTGHSERNEGYFKSALAYFQQKFGSENVMYASVHYDETTPHMHMGIVPM
TKDGKLSSKQVFDRNTLRTIQTEFPRYMQEQGYEVVRGSENSQRKKLSVNEYKHVQDTIKQNRQHETKLK
EQGLKTIAEINPEVTAKDEKGERVKLSEHAELIPKLAKQFDIEYVFQSLRKVIEMVRQQLKRRFERLKQK
EQELSEREKTIAAKEKAFAEFEKNFELPSPIAQPQFYRMQVEEGIIKPAEKLAEHLERSNDKFSHAQLKM
PEKGRERK

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   15192 GenBank   NZ_CP130469
Plasmid name   RE225|unnamed Incompatibility group   -
Plasmid size   3420 bp Coordinate of oriT [Strand]   1020..1047 [+]
Host baterium   Limosilactobacillus reuteri strain RE225

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -