Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114704
Name   oriT_pSg53-cfr(D) in_silico
Organism   Streptococcus gallolyticus strain Sg53
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MZ503509 (13657..13793 [+], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_pSg53-cfr(D)
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGATTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9433 GenBank   WP_222149748
Name   Relaxase_LZD38_RS12805_pSg53-cfr(D) insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 47590.16 Da        Isoelectric Point: 8.1324

>WP_222149748.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactobacillales]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKARLSDNGVILSERGQTFSYAFLDANNKQRRARESRLGSDFGRETILHELENR
ARQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTINRFIDTIKQLAGRVPELTQ
RVTRKLKQTKEKILDDFERRFSKDMKNDEQEQQKSLEKQANRDVQSEKKPTKDHDRGMSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-280)


  Protein structure



No available structure.




Host bacterium

ID   15139 GenBank   NZ_MZ503509
Plasmid name   pSg53-cfr(D) Incompatibility group   -
Plasmid size   17108 bp Coordinate of oriT [Strand]   13657..13793 [+]
Host baterium   Streptococcus gallolyticus strain Sg53

Cargo genes

Drug resistance gene   Cfr(D)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -