Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 114683
• Name: oriT_XES5|unnamed4
• Organism: UNVERIFIED_ORG: Roseateles sp. XES5
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP084756 (8403..8426 [-], 24 nt)
• oriT length: 24 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 24 nt

>oriT_XES5|unnamed4
TTGCTAAGCAATGTATAAGTGCGC

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_LHK14_RS27895_XES5|unnamed4

• ID: 9419
• GenBank: WP_226882642
• Name: mobQ_LHK14_RS27895_XES5|unnamed4
• UniProt ID: _
• Length: 315 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 315 a.a.
• Molecular weight: 35773.54 Da
• Isoelectric Point: 11.0842

>WP_226882642.1 MULTISPECIES: MobQ family relaxase [Pseudomonadota]
MAIYHFSGQILGRTAKLNPDGSGRPGSKAAAAAAYRSGSQVRDYRTGELHDYSRRKGVAHAEIMMPVGAA
AWLEDRELLWGAVERMEKRADAQLAREFNMALPHELDAAQRLELVRGFVQRHFVNRGMVADIALHDPVPE
QGQSRHNYHAHVMLTLRRATPDGLDPVKTREWNSKELLNLWRAEWAVSCNAALARAGRQVRVDHRTLVAQ
RDDALQRKDMARAAELNRAPEIHVGPRARQAVRHQRPPVSRVREVGAVKARAPGQAPAKRVREYPARDSG
TRLDWLERIVVGNDERLRRDVERINRRFDRYQGSE

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (29-213)

Protein structure

No available structure.

Host bacterium

• ID: 15118
• GenBank: NZ_CP084756
• Plasmid name: XES5|unnamed4
• Incompatibility group: -
• Plasmid size: 18961 bp
• Coordinate of oriT [Strand]: 8403..8426 [-]
• Host baterium: UNVERIFIED_ORG: Roseateles sp. XES5

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -