Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114642
Name   oriT_XGS7|unnamed2 in_silico
Organism   UNVERIFIED_ORG: Shinella sp. XGS7
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP084760 (8398..8421 [-], 24 nt)
oriT length   24 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 24 nt

>oriT_XGS7|unnamed2
TTGCTAAGCAATGTATAAGTGCGC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9390 GenBank   WP_226882642
Name   mobQ_LHJ69_RS24205_XGS7|unnamed2 insolico UniProt ID   _
Length   315 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 315 a.a.        Molecular weight: 35773.54 Da        Isoelectric Point: 11.0842

>WP_226882642.1 MULTISPECIES: MobQ family relaxase [Pseudomonadota]
MAIYHFSGQILGRTAKLNPDGSGRPGSKAAAAAAYRSGSQVRDYRTGELHDYSRRKGVAHAEIMMPVGAA
AWLEDRELLWGAVERMEKRADAQLAREFNMALPHELDAAQRLELVRGFVQRHFVNRGMVADIALHDPVPE
QGQSRHNYHAHVMLTLRRATPDGLDPVKTREWNSKELLNLWRAEWAVSCNAALARAGRQVRVDHRTLVAQ
RDDALQRKDMARAAELNRAPEIHVGPRARQAVRHQRPPVSRVREVGAVKARAPGQAPAKRVREYPARDSG
TRLDWLERIVVGNDERLRRDVERINRRFDRYQGSE

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(29-213)


  Protein structure



No available structure.




Host bacterium

ID   15077 GenBank   NZ_CP084760
Plasmid name   XGS7|unnamed2 Incompatibility group   -
Plasmid size   18961 bp Coordinate of oriT [Strand]   8398..8421 [-]
Host baterium   UNVERIFIED_ORG: Shinella sp. XGS7

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -