Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114636
Name   oriT_HDW4A|p_unnamed2 in_silico
Organism   Diaphorobacter sp. HDW4A
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP049912 (11068..11205 [-], 138 nt)
oriT length   138 nt
IRs (inverted repeats)      28..34, 38..44  (ACATGGC..GCCATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 138 nt

>oriT_HDW4A|p_unnamed2
CGAATGGGCAGGCGGGGATTGGCAGGAACATGGCGTAGCCATGTGTATGACAATCCGCATCCTGTTAGCTCAACCGCTTTACTATCGTATCAGCAGTTTAGGTGCACGGGACGCACTTTGCAACAAGCACAAATGGCG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9387 GenBank   WP_166312491
Name   traI_G7047_RS30715_HDW4A|p_unnamed2 insolico UniProt ID   _
Length   889 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 889 a.a.        Molecular weight: 101794.37 Da        Isoelectric Point: 9.7552

>WP_166312491.1 TraI/MobA(P) family conjugative relaxase [Diaphorobacter sp. HDW4A]
MIVKKVPNSKTKHKTGSIRDLADYIREPHNQNPDEKVPYANGRGFLCDGHAAQREEMVALAAESVRSKNP
VNHYIMSWREGEQPSPEQVEEAVSIFMEELGWKDHQAIYGLHKDTDNIHLHIAINRVHPEKLKIVEINRG
FDIEMAHKAIARIEHAQGWQREQNGRYQVLENGELGRAPYDPEKPRQPDQKKRDMENRTGEKSAHRIAIE
DGAAIIKQAQSWEQLHRELAAKGMRYEKTGSGATVFVGDVGVKASDVDRNASLAKMQKRLGEYQPAPQHQ
QVAQREPEPIKPDVPGWKDYITGRKAHYAAKNAAKLALDKQQEQERKQLAEQQKARRDELMRGNWKGKGE
VLNAMRSVIAAEQAAEKAALKEKHQKQREQWRQQFRPYPDLEQWQRMQKSPELAEQWRHRASEPQRIEGD
RSEPPTVRDIRAYVPEIVGQQVHYSRKDEAGRGGGVSFVDKGKSIDIHDWRNRDSTLAALQLSAQKWGSF
TVTGCDEYKTMCVKLAAEHGFKITNPELQESIQRERQRIQQERAQAMKSEQLKQFERYAEAVGAERYRVT
SIKMREDGGKQTFILDKKDGITRGFTPQEIEQRTPEMQRLQRRGENLYYTPLSDKKHHILIDDMSREKLE
RLIKDGYQPAAVLESSPGNYQAIITVPKLGTVHDKDVGNRLSDALNREYGDPKLSGAIHPHRAPGYENRK
PKHQREDGSYPEVRLLKAERRECVKALALSSQIDAEYQRQAALKAQQPERSKAKPALELAAASGSAIDAY
QRHYRDVLKRQRGGEVDLSRVDSMIAVRMRVTGHDQAAIEGAIRQCAPATRQKDEGRDWNDYAQRTARYA
YSAAGDRQAAELGKYRQQWEKLEGREPVRQQEQAKAQKIERDNSPGMSR

  Protein domains


Predicted by InterproScan.

RepB DNA-primase from phage plasmid (RepB_primase)

(547-806)

Large polyvalent protein-associated domain 7 (LPD7)

(442-526)

Relaxase/Mobilisation nuclease domain (Relaxase)

(17-273)


  Protein structure



No available structure.




Host bacterium

ID   15071 GenBank   NZ_CP049912
Plasmid name   HDW4A|p_unnamed2 Incompatibility group   -
Plasmid size   42116 bp Coordinate of oriT [Strand]   11068..11205 [-]
Host baterium   Diaphorobacter sp. HDW4A

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -