Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114628
Name   oriT_SOG26|unnamed1 in_silico
Organism   Neorhizobium sp. SOG26
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP025514 (14553..14583 [+], 31 nt)
oriT length   31 nt
IRs (inverted repeats)      1..7, 11..17  (ACATTAC..GTAATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 31 nt

>oriT_SOG26|unnamed1
ACATTACGCAGTAATGTATAAGCGCGCACTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9381 GenBank   WP_245450638
Name   mobQ_CYG48_RS22240_SOG26|unnamed1 insolico UniProt ID   _
Length   360 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 360 a.a.        Molecular weight: 41581.59 Da        Isoelectric Point: 9.9942

>WP_245450638.1 MobQ family relaxase [Neorhizobium sp. SOG26]
MLSTSVLPLNHMDDERRRTIAIYRFSAQIISRSAGRSATAAAAYRAGVLIEDRRTGQVHDYDRRSGVVHA
EIMAPEATPAWMMDRTALWNAVEIAEKRRDAQLSREVQLALPHELDAAQRLSLVRDYVRQAFVVRGMIAD
IAIHAPHRQGDDRNHHVHVMLTMREITADGFGKKDRTWNDTSLIEHWRETWQEAVNHALERVGHATRVDH
RSLEEQRLDAQEKAEKARSANDNEQARVFDLAAIRLDRDPQPKIGHIATALERRGEQTERGNLWRDVVAR
NFDRFGAWIILQRARLDALWRRFEGAVERLQERGFEDGQERPAQDIPSSSRFTPEQRDRLLGRSKGRTGA
RPREKDDRER

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(36-223)


  Protein structure



No available structure.




Host bacterium

ID   15063 GenBank   NZ_CP025514
Plasmid name   SOG26|unnamed1 Incompatibility group   -
Plasmid size   15377 bp Coordinate of oriT [Strand]   14553..14583 [+]
Host baterium   Neorhizobium sp. SOG26

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -