Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 114562
• Name: oriT_pGR1187-1
• Organism: Lactiplantibacillus plantarum subsp. plantarum strain GR1187
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP078133 (2153..2172 [-], 20 nt)
• oriT length: 20 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 20 nt

>oriT_pGR1187-1
GTTGTGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_KVG02_RS14980_pGR1187-1

• ID: 9332
• GenBank: WP_046811117
• Name: mobQ_KVG02_RS14980_pGR1187-1
• UniProt ID: _
• Length: 687 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 687 a.a.
• Molecular weight: 80664.10 Da
• Isoelectric Point: 9.4973

>WP_046811117.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSSIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWN
EVERKDWRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKITEWRHNWAVSVNQVLEQKNIP
DRISEKSFENQGIDEVPTQHEGINSKRHERKEFNQQVKDYRKAKASYKNNQEKAINRGHLDSLSKHFSFN
EKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLAFTKRPYVGWKLL
MQQEKETKIDLKYTLMIHSDSLESLEHVDKGLLEKYSPAEQQTITRAVKDLRTIMAVKQVIQTQYQEVLR
KVFPNGNFNELPMIKQEQAYTAVMYYDPALKPCKVETIAQWQKNPPRVFNTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECRADPTIKNSQIEKIQKQLKAQQAKDDQYRKANMGHYQPLNYKPVSPNY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMAKKQRQHQTRNRHEDGGMHL

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (17-241)

• Nicking enzyme C-terminal middle helical domain (NES_C_h) (276-384)

Protein structure

No available structure.

Host bacterium

• ID: 14997
• GenBank: NZ_CP078133
• Plasmid name: pGR1187-1
• Incompatibility group: -
• Plasmid size: 64433 bp
• Coordinate of oriT [Strand]: 2153..2172 [-]
• Host baterium: Lactiplantibacillus plantarum subsp. plantarum strain GR1187

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -