Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114560
Name   oriT_pGR1184-1 in_silico
Organism   Lactiplantibacillus plantarum subsp. plantarum strain GR1184
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP078130 (2153..2172 [-], 20 nt)
oriT length   20 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 20 nt

>oriT_pGR1184-1
GTTGTGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9330 GenBank   WP_046811117
Name   mobQ_KVG01_RS14980_pGR1184-1 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80664.10 Da        Isoelectric Point: 9.4973

>WP_046811117.1 MobQ family relaxase [Lactiplantibacillus plantarum]
MAIFHMSFSNISAGKGRSSIAGASYRSGEKLFDQKEGRSYFYARSVMPESFILTPKNAPEWASDREKLWN
EVERKDWRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNR
PFNPDGTWGLKSKRENILDENGNKTYTGNSRFPRSRKVWLVDWDKKEKITEWRHNWAVSVNQVLEQKNIP
DRISEKSFENQGIDEVPTQHEGINSKRHERKEFNQQVKDYRKAKASYKNNQEKAINRGHLDSLSKHFSFN
EKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELNFEQTTQAERRELIKETDSEQTVFKGSELNERLMNIRDDLLTQQLLAFTKRPYVGWKLL
MQQEKETKIDLKYTLMIHSDSLESLEHVDKGLLEKYSPAEQQTITRAVKDLRTIMAVKQVIQTQYQEVLR
KVFPNGNFNELPMIKQEQAYTAVMYYDPALKPCKVETIAQWQKNPPRVFNTQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECRADPTIKNSQIEKIQKQLKAQQAKDDQYRKANMGHYQPLNYKPVSPNY
YLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMAKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   14995 GenBank   NZ_CP078130
Plasmid name   pGR1184-1 Incompatibility group   -
Plasmid size   64612 bp Coordinate of oriT [Strand]   2153..2172 [-]
Host baterium   Lactiplantibacillus plantarum subsp. plantarum strain GR1184

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -