Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114541 |
| Name | oriT_pLM20P4  |
| Organism | Paracoccus yeei |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_KM659096 (19144..19163 [+], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_pLM20P4
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 9317 | GenBank | WP_051578261 |
| Name | mobQ_HTD86_RS00095_pLM20P4 |
UniProt ID | A0A0D5A1R0 |
| Length | 467 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 467 a.a. Molecular weight: 50914.82 Da Isoelectric Point: 10.5312
>WP_051578261.1 MobQ family relaxase [Paracoccus yeei]
MASYHLSVKTIKRSAGRSATAAAAYRSGGVIACEREGRVHDYSAKRGIEACFILAPEGAPDWVRDRAALW
NAAEARETRKNSVTAREWELALPAELGAEDRAGLVRDFGQALVARYGIAVDVALHAPHREGDQRNHHAHV
LTTTRAIGAEGFGDKTRVLDAAKTGGVEIEALRGLWAGMQNRALERAGEAARVDHRSLEAQRQVAEARGD
AFAAEALDRAPEMKLGPAANAMERRAQREAEMNGSVYRPVTERGRAVQALRQARAALQQMRERVGQVQAA
YAQARDKGQDRVAAGLAALRAAAARDGGGSLTERLAALLQDRRARDGGHMDRRPAPSAQARDAAHGREPD
RERAPASRPRNEQLLQALVQIANTAARGAQPRFTDAKAADAFFRDLRTSYGQDILTRISQGDDRVLAGDF
PKAEDRQQVARAITGIARVHGLEQDRRGAERETGRSTRKEADKDWER
MASYHLSVKTIKRSAGRSATAAAAYRSGGVIACEREGRVHDYSAKRGIEACFILAPEGAPDWVRDRAALW
NAAEARETRKNSVTAREWELALPAELGAEDRAGLVRDFGQALVARYGIAVDVALHAPHREGDQRNHHAHV
LTTTRAIGAEGFGDKTRVLDAAKTGGVEIEALRGLWAGMQNRALERAGEAARVDHRSLEAQRQVAEARGD
AFAAEALDRAPEMKLGPAANAMERRAQREAEMNGSVYRPVTERGRAVQALRQARAALQQMRERVGQVQAA
YAQARDKGQDRVAAGLAALRAAAARDGGGSLTERLAALLQDRRARDGGHMDRRPAPSAQARDAAHGREPD
RERAPASRPRNEQLLQALVQIANTAARGAQPRFTDAKAADAFFRDLRTSYGQDILTRISQGDDRVLAGDF
PKAEDRQQVARAITGIARVHGLEQDRRGAERETGRSTRKEADKDWER
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A0D5A1R0 |
T4CP
| ID | 10815 | GenBank | WP_051578263 |
| Name | t4cp2_HTD86_RS00105_pLM20P4 |
UniProt ID | _ |
| Length | 345 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 345 a.a. Molecular weight: 36381.24 Da Isoelectric Point: 6.8602
>WP_051578263.1 type IV secretory system conjugative DNA transfer family protein [Paracoccus yeei]
MIGRAFRFLAILGRLAIALPVGILFLLFALLLGTGAGLLAFVILRGLLTGTAPDGADPATIWGMIGMMLC
LLPAWALSLAIWAEFCGLGPLFARRGFSHGSARFSSKAERAAFQRGEGLLIGRDADTGRLLRYDGPAHLI
TLAPTRAGKGVGTIVPNLLTVNRSVMVIDPQGENARITAQARQKFGAVHVLDPFGVTGLPGAAYNPLDRL
TPDSLGLGEDAAALAEALQDIARDAERPQEPPGGLSGPCPHSGGAEGTTDALSAALWPAERLKTLPYEFA
ALGRLEAMERAMGLMAGYGIQLWPILQDMSQLKDLYGTRAGTFIANAGIQQVFGVNDLETAKWLS
MIGRAFRFLAILGRLAIALPVGILFLLFALLLGTGAGLLAFVILRGLLTGTAPDGADPATIWGMIGMMLC
LLPAWALSLAIWAEFCGLGPLFARRGFSHGSARFSSKAERAAFQRGEGLLIGRDADTGRLLRYDGPAHLI
TLAPTRAGKGVGTIVPNLLTVNRSVMVIDPQGENARITAQARQKFGAVHVLDPFGVTGLPGAAYNPLDRL
TPDSLGLGEDAAALAEALQDIARDAERPQEPPGGLSGPCPHSGGAEGTTDALSAALWPAERLKTLPYEFA
ALGRLEAMERAMGLMAGYGIQLWPILQDMSQLKDLYGTRAGTFIANAGIQQVFGVNDLETAKWLS
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 14976 | GenBank | NZ_KM659096 |
| Plasmid name | pLM20P4 | Incompatibility group | - |
| Plasmid size | 20746 bp | Coordinate of oriT [Strand] | 19144..19163 [+] |
| Host baterium | Paracoccus yeei |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |