Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 114523
• Name: oriT_MSL129|unnamed2
• Organism: Leuconostoc mesenteroides strain MSL129
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP128562 (7504..7537 [+], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): _
• Location of nic site: 16..17
• Conserved sequence flanking the nic site: TGTGTGGTGT
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_MSL129|unnamed2
CCACCAATTTATGTGTGGTGTGTAAGTGCGCATT

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_QJS59_RS10585_MSL129|unnamed2

• ID: 9304
• GenBank: WP_281446945
• Name: mobV_QJS59_RS10585_MSL129|unnamed2
• UniProt ID: _
• Length: 411 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 411 a.a.
• Molecular weight: 47364.69 Da
• Isoelectric Point: 6.7873

>WP_281446945.1 MobV family relaxase [Leuconostoc mesenteroides]
MAHLKKNTRGAVPGLAVHFERKTDHHSNKEIDVAKTYLNQDLISDDSDMISRFNERLNDVYCMKRDDVKA
LATWIVTLPEELSEAPYEQQSAFFQATKQFLDDRYGQENAVAAVVHYDETTPHLHYAFVPVVFDAKKERY
KVSAKEVLTRHDLQTFHDDLDQTLKQTLPFYEQGILNNKTLPFENVAEIKKYNDQFKALKEELANVEENI
SAKKALLKVTNQALTEVDLAEKQIDDFKQALSKNLFGKTVIKPDDLDRFKSVLANMKKATLQGQRDAAAS
NQALLKIKDQFAELQADYQQLKDTHQALQQRVRESQQMDYAMRDMLKNDYGVEKIPHSDVEARYVLYRLD
HEQLTKSKKEATSWLAMLKTARENPDSKIASSRLERGIEQVKALINRIIELTRDLFKGPSL

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-174)

Protein structure

No available structure.

Host bacterium

• ID: 14958
• GenBank: NZ_CP128562
• Plasmid name: MSL129|unnamed2
• Incompatibility group: -
• Plasmid size: 17970 bp
• Coordinate of oriT [Strand]: 7504..7537 [+]
• Host baterium: Leuconostoc mesenteroides strain MSL129

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -