Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114516
Name   oriT_NMI2990_17|p3 in_silico
Organism   Klebsiella oxytoca strain NMI2990_17
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP129619 (1907..1929 [-], 23 nt)
oriT length   23 nt
IRs (inverted repeats)      2..8, 12..18  (ACATTGC..GCAATGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 23 nt

>oriT_NMI2990_17|p3
CACATTGCGAAGCAATGTATAAG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9299 GenBank   WP_289192565
Name   mobQ_QTO83_RS30315_NMI2990_17|p3 insolico UniProt ID   _
Length   383 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 383 a.a.        Molecular weight: 44795.90 Da        Isoelectric Point: 10.1269

>WP_289192565.1 MobQ family relaxase [Klebsiella oxytoca]
MAIFHMSFKILKRSEGKSSVYLSAYQNREKTIDNRTGATWDYSKKEGFFGSTILSPAGTPADLVADSASL
WNAVEAAENRKDAQLCRYLDIAIPKELDDGQKKQLVLDYCQENFVDYGMIADIAFHDLNSHNPHAHVMLT
LRTVSPAGFGNKEREWNKKENIEAWRENWEIIANGRLKKYGHKSRIDSRSLEEQKEEAERKAVFAKTPQA
KAVWIAKSIRLDRTPMTRIHRHNWKEGQKLRKLEQEEKRILYKKASLTYHQMTKPIEPEQSMKIEKTPIA
QKIKSIFETAKNKLNSKIADFFKPKPKKEEFQSSYEIDELGEHILKKDADNWDQKNNDKIKKQVRENKLK
EEADRQRYKEEDQKLKNTSKPTQQNNNSRKLKR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-197)


  Protein structure



No available structure.




Host bacterium

ID   14951 GenBank   NZ_CP129619
Plasmid name   NMI2990_17|p3 Incompatibility group   -
Plasmid size   3483 bp Coordinate of oriT [Strand]   1907..1929 [-]
Host baterium   Klebsiella oxytoca strain NMI2990_17

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -