Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114452 |
| Name | oriT_pH1NP1  |
| Organism | Polaromonas sp. H1N |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_MG869619 (3943..3972 [-], 30 nt) |
| oriT length | 30 nt |
| IRs (inverted repeats) | 1..7, 11..17 (GTTTCTC..GAGAAAC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 30 nt
>oriT_pH1NP1
GTTTCTCGAAGAGAAACAACTAAGTGCGCC
GTTTCTCGAAGAGAAACAACTAAGTGCGCC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 9266 | GenBank | WP_181375199 |
| Name | MobA_MobL_HTR40_RS00025_pH1NP1 |
UniProt ID | _ |
| Length | 712 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 712 a.a. Molecular weight: 79040.87 Da Isoelectric Point: 9.2469
>WP_181375199.1 MobA/MobL family protein [Polaromonas sp. H1N]
MASYHCTVKVGSKGRAGPHALYIARDGKYADAKQKSRREDLECKSHGNMPNWATKKPNLFWQAADEHERA
NGATYREIEIALPRELTPEQRRALVEDFVQQEIGIDHAYQWAIHIPRAALEKGEQPHAHIMYSERTTDGI
ERDPEQYFKRYNAKTPGKGGCKKDSAGTPERLQVTRERVATLTNVHLERAGHATTVDHRSLKAQGIDRLP
EKHIGPVTVRQMAELEIAALLERRGAEGELQTACQELSTIDVSGDLKTAVAERDEKINQLKEVNDLRRAT
FASIANNVRAASGYCQALESLNRFTESDLIGAFGNVETASRDSRAIEAIGWRTRENVGQSRDSLHTAGKY
LQAATGLANHGDRDPGRVEKTIGRRRSESDYGRVVGASVQQFKRASHVIQHAGRHLEDFVRTIAASCREI
WRRIEAAKALEALRKGAPVSPQAKPEQLPVGSASPGRDMSHLDCLKDDQKAALSAVKLSIVRASEGDQAA
LDTLPAMFLKFKSIADDMRAIKPPLRQDEAIRAAGAADSQRDDAARVDVNRQALARNITDMVPYPPEARG
LFVAAHHTSFESYLANAAKDLQYQRYHVPRPDVGMLGNASKQKAWDEKEAGLNAAVQRVEREIAWRDKAL
LQAKAARVAQDAAQIAQHARDIADLIASDASDRAAGEHQQTTFKKEVLYLRELAEKMLTSEQKTQLERGL
ENIRVRSRGVSR
MASYHCTVKVGSKGRAGPHALYIARDGKYADAKQKSRREDLECKSHGNMPNWATKKPNLFWQAADEHERA
NGATYREIEIALPRELTPEQRRALVEDFVQQEIGIDHAYQWAIHIPRAALEKGEQPHAHIMYSERTTDGI
ERDPEQYFKRYNAKTPGKGGCKKDSAGTPERLQVTRERVATLTNVHLERAGHATTVDHRSLKAQGIDRLP
EKHIGPVTVRQMAELEIAALLERRGAEGELQTACQELSTIDVSGDLKTAVAERDEKINQLKEVNDLRRAT
FASIANNVRAASGYCQALESLNRFTESDLIGAFGNVETASRDSRAIEAIGWRTRENVGQSRDSLHTAGKY
LQAATGLANHGDRDPGRVEKTIGRRRSESDYGRVVGASVQQFKRASHVIQHAGRHLEDFVRTIAASCREI
WRRIEAAKALEALRKGAPVSPQAKPEQLPVGSASPGRDMSHLDCLKDDQKAALSAVKLSIVRASEGDQAA
LDTLPAMFLKFKSIADDMRAIKPPLRQDEAIRAAGAADSQRDDAARVDVNRQALARNITDMVPYPPEARG
LFVAAHHTSFESYLANAAKDLQYQRYHVPRPDVGMLGNASKQKAWDEKEAGLNAAVQRVEREIAWRDKAL
LQAKAARVAQDAAQIAQHARDIADLIASDASDRAAGEHQQTTFKKEVLYLRELAEKMLTSEQKTQLERGL
ENIRVRSRGVSR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 14887 | GenBank | NZ_MG869619 |
| Plasmid name | pH1NP1 | Incompatibility group | - |
| Plasmid size | 29488 bp | Coordinate of oriT [Strand] | 3943..3972 [-] |
| Host baterium | Polaromonas sp. H1N |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |