Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 114430
• Name: oriT_pAAk1
• Organism: Aeromonas dhakensis AAK1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NC_019014 (96..126 [+], 31 nt)
• oriT length: 31 nt
• IRs (inverted repeats): 15..20, 26..31 (AGTGTA..TACACT) 1..7, 11..17 (ACTTTGC..GCAAAGT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 31 nt

>oriT_pAAk1
ACTTTGCGTAGCAAAGTGTAAGGAGTACACT

oriT secondary structure

Predicted by RNAfold.

Relaxase

Mob_Pre_AQU_RS00005_pAAk1

• ID: 9250
• GenBank: WP_015056832
• Name: Mob_Pre_AQU_RS00005_pAAk1
• UniProt ID: I2F904
• Length: 330 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 330 a.a.
• Molecular weight: 36641.53 Da
• Isoelectric Point: 9.5676

>WP_015056832.1 plasmid recombination protein [Aeromonas dhakensis]
MKFTFAVAKMSKADIGRAQGHNLRLHETSSQLPKRAWFTASPMHTKVEWDQGKLDAASALAKRKDAVVAI
EFIIQVGNQTDWREDPTPECPEGPPIERDLGQFFAPFGEQVKAWADQEFGPENVVSIQLHMDESTPHFHV
IATPIKDGKLQAKAWLDGGRKLAGIRRRCHATINEKIPCVYTPNGLGGNPHRPDLRAGTAPVPTMLEKMS
GHAKAQKLERENAALQEENAQLKQLLFSRQKGRYSADNVEQAKQATAEAQKAQSELQKAQGEVKRLTMAL
DSAQGVIGRQGAEIDKLKGYNRTLSEQNNELEEKLQDLQPKRSRGKGMGQ

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (58-176)

Protein structure

• AlphaFold DB: I2F904

Host bacterium

• ID: 14865
• GenBank: NC_019014
• Plasmid name: pAAk1
• Incompatibility group: -
• Plasmid size: 4161 bp
• Coordinate of oriT [Strand]: 96..126 [+]
• Host baterium: Aeromonas dhakensis AAK1

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -