Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114403
Name   oriT_pRUMAL04 in_silico
Organism   Ruminococcus albus 7 = DSM 20455
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NC_014827 (1499..1518 [-], 20 nt)
oriT length   20 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 20 nt

>oriT_pRUMAL04
GTGGTGTATAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9229 GenBank   WP_050793340
Name   mobQ_RUMAL_RS21110_pRUMAL04 insolico UniProt ID   _
Length   468 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 468 a.a.        Molecular weight: 52964.60 Da        Isoelectric Point: 8.0774

>WP_050793340.1 MobQ family relaxase [Ruminococcus albus]
MAIYHCSIKIGSRANGQSAIAAAAYRAGDNLKDKETGLVSDYSRKGGVVFSEISLCQNAPAEYADRATLW
NAVHEIEKAKNSQLWREFEVALPQEFSRAEQIDTVRGFVKGLTKQGMCVDWSLHDKEDGNPHAHIMATMR
SITEGGKWAPKSRKVYDLDENGERIFQKVDKSGRKQYKNHKEDYNDWNKKERVEEWRAAWAACCNERLAE
RDRIDHRSYKRQGIEQEPTIHEGYAARKIAAEGKPSERVRINEEIRERNNMLKQLAEQLHHIEQQLAELI
KEKGSAAINAGKQRIADLLARRSRAVDSDDRGLADGERTTESRTERTTATEADRLIRESEAERRAALRNV
GLEESGRTAQGNEKKAEHSATRLQPTEQPDTAAIFGAADSLIQDTDTNQEAVRAATADTDSTIRQSETKV
TSAAAHRQERELAEQRRAAEERRRAEEAERKARAASERARKTSYDRGR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-240)


  Protein structure



No available structure.




Host bacterium

ID   14838 GenBank   NC_014827
Plasmid name   pRUMAL04 Incompatibility group   -
Plasmid size   7420 bp Coordinate of oriT [Strand]   1499..1518 [-]
Host baterium   Ruminococcus albus 7 = DSM 20455

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -