Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114380
Name   oriT_pA29J1 in_silico
Organism   Pseudomonas sp. strain ANT_J29
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_MK376346 (2077..2111 [-], 35 nt)
oriT length   35 nt
IRs (inverted repeats)      6..11, 15..20  (CTTTGC..GCAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 35 nt

>oriT_pA29J1
ACGATCTTTGCGAAGCAAAGTCTAGTGAGTACACT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9221 GenBank   WP_176704387
Name   mobV_HXI63_RS00015_pA29J1 insolico UniProt ID   _
Length   320 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 320 a.a.        Molecular weight: 35633.57 Da        Isoelectric Point: 10.2699

>WP_176704387.1 MobV family relaxase [Pseudomonas sp.]
MAYAIMRAKKLANMGSVAASMQHCYRERETHNADQERTPYNQHLVAKSTDEAMGKLRALLPEKRRKDAVL
AVEYVMTASPEWFAQATPEQEKAFFQRSLQWLADKYGADRIVTASIHRDEATPHLSAFVVPLTQDKRLSA
KEFIGSRDKMRADQSTYAACVADLGLERGIEGSKATHQTIQQHYAAIQRGVAPKAVVSPKSVEPRVLEKA
TFFDKARGRGDLVESPEMIAERLTKAINAGFAGTVAQASTAAQERRKAKEAQDTANAIRKRLEALQEPFK
GLSKAQMAEVLQLASKLQEENTKKVSRQREQGRPRGGIER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-184)


  Protein structure



No available structure.




Host bacterium

ID   14815 GenBank   NZ_MK376346
Plasmid name   pA29J1 Incompatibility group   -
Plasmid size   3214 bp Coordinate of oriT [Strand]   2077..2111 [-]
Host baterium   Pseudomonas sp. strain ANT_J29

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -