Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   114329
Name   oriT_SECVM-16|unnamed2 in_silico
Organism   Salmonella enterica subsp. enterica serovar Schwarzengrund strain SECVM-16
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_CP130102 (975..1008 [+], 34 nt)
oriT length   34 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 34 nt

>oriT_SECVM-16|unnamed2
GGTCACGATTTTACGAAGTAAAGTCTAGTGAGTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   9179 GenBank   WP_052928736
Name   mobV_QPJ63_RS24830_SECVM-16|unnamed2 insolico UniProt ID   A0A5X4DEA0
Length   321 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 321 a.a.        Molecular weight: 35964.73 Da        Isoelectric Point: 10.5954

>WP_052928736.1 MobV family relaxase [Salmonella enterica]
MAFAIMRAKKLNGMGAVAASLQHCYRDRDTPNADQTRTAENEHRAATSTDEAMGRLRELLPEKRRKDAVL
AVEYVMTASPEWWTKATSEQQADFFDQAHKWLAEKYGADRIITATIHRDETSPHLSAFVVPLTADGRLSA
KDFIGNRAKMTADQTSFAKAVQHLGLERGIERSRATHTSIKQHYAAIEKGTKGEVTITPEAVQPRVLKKG
LFSRQEETPEAVAARLTDAINKGHAGTVANAAVSAQNARRAREMQKTMVDQQKKLKTLQEPFKGLSREQV
AEVIKMATTMQRENEAAKAAKLQRQKEQRQQRRSQDRGFSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-184)


  Protein structure


Source ID Structure
AlphaFold DB A0A5X4DEA0


Host bacterium

ID   14764 GenBank   NZ_CP130102
Plasmid name   SECVM-16|unnamed2 Incompatibility group   -
Plasmid size   2569 bp Coordinate of oriT [Strand]   975..1008 [+]
Host baterium   Salmonella enterica subsp. enterica serovar Schwarzengrund strain SECVM-16

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -