Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 114322
• Name: oriT_SECVM-17|unnamed1
• Organism: Salmonella enterica subsp. enterica serovar Schwarzengrund strain SECVM-17
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_CP130098 (1371..1404 [-], 34 nt)
• oriT length: 34 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 34 nt

>oriT_SECVM-17|unnamed1
GGTCACGATTTTACGAAGTAAAGTCTAGTGAGTA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_QPE07_RS24850_SECVM-17|unnamed1

• ID: 9172
• GenBank: WP_052928736
• Name: mobV_QPE07_RS24850_SECVM-17|unnamed1
• UniProt ID: A0A5X4DEA0
• Length: 321 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 321 a.a.
• Molecular weight: 35964.73 Da
• Isoelectric Point: 10.5954

>WP_052928736.1 MobV family relaxase [Salmonella enterica]
MAFAIMRAKKLNGMGAVAASLQHCYRDRDTPNADQTRTAENEHRAATSTDEAMGRLRELLPEKRRKDAVL
AVEYVMTASPEWWTKATSEQQADFFDQAHKWLAEKYGADRIITATIHRDETSPHLSAFVVPLTADGRLSA
KDFIGNRAKMTADQTSFAKAVQHLGLERGIERSRATHTSIKQHYAAIEKGTKGEVTITPEAVQPRVLKKG
LFSRQEETPEAVAARLTDAINKGHAGTVANAAVSAQNARRAREMQKTMVDQQKKLKTLQEPFKGLSREQV
AEVIKMATTMQRENEAAKAAKLQRQKEQRQQRRSQDRGFSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-184)

Protein structure

• AlphaFold DB: A0A5X4DEA0

Host bacterium

• ID: 14757
• GenBank: NZ_CP130098
• Plasmid name: SECVM-17|unnamed1
• Incompatibility group: -
• Plasmid size: 2569 bp
• Coordinate of oriT [Strand]: 1371..1404 [-]
• Host baterium: Salmonella enterica subsp. enterica serovar Schwarzengrund strain SECVM-17

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -