Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 114192 |
| Name | oriT_pTB3  |
| Organism | Roseobacter denitrificans OCh 114 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NC_008388 (3207..3226 [-], 20 nt) |
| oriT length | 20 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 20 nt
>oriT_pTB3
GTTTGCATAAGTGCGCCCTT
GTTTGCATAAGTGCGCCCTT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 9115 | GenBank | WP_011655527 |
| Name | mobQ_RD1_RS20290_pTB3 |
UniProt ID | Q07GC8 |
| Length | 427 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 427 a.a. Molecular weight: 48478.57 Da Isoelectric Point: 6.5242
>WP_011655527.1 MobQ family relaxase [Roseobacter denitrificans]
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKKGIEETFILTPKDAPDWATDRSRLW
NEVEASETRRNSVTAREWELALPSEISAEDRSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEPEGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREAALERGD
QLSAEELDRDPELKLGPAANSMERRAKAMAEREGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGSEREAGQGRVSAGLAALRAATTKDRNRTPDDFRERLARVVGHSRDQDDTPKPESRNYARERLKEIMEK
DAGRDGQSAVQKLDGHSEYGLGEDTGREARKPSVNERLKNVLNKPREKLEIEDERDQEKDQEVEKDRDID
RDPGLSH
MASYHLSVKTIKRSAGRSATAAAAYRVGERIECQREGRVHDYTRKKGIEETFILTPKDAPDWATDRSRLW
NEVEASETRRNSVTAREWELALPSEISAEDRSQITRDFAQELVSRYGVAVDVAIHAPHREGDQRNHHAHV
LTSTRKLEPEGFTAKTRVLDSAKTGGVEIEQMRGLWAELQNRALERAGEVERVDHRSLEAQREAALERGD
QLSAEELDRDPELKLGPAANSMERRAKAMAEREGREYVPVTERGAVVHAARQARAAFREMRERLDIARET
YGSEREAGQGRVSAGLAALRAATTKDRNRTPDDFRERLARVVGHSRDQDDTPKPESRNYARERLKEIMEK
DAGRDGQSAVQKLDGHSEYGLGEDTGREARKPSVNERLKNVLNKPREKLEIEDERDQEKDQEVEKDRDID
RDPGLSH
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | Q07GC8 |
T4CP
| ID | 10561 | GenBank | WP_044033631 |
| Name | t4cp2_RD1_RS20280_pTB3 |
UniProt ID | _ |
| Length | 550 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 550 a.a. Molecular weight: 60656.40 Da Isoelectric Point: 6.5811
>WP_044033631.1 type IV secretory system conjugative DNA transfer family protein [Roseobacter denitrificans]
MRGVMLVFGGLFRFFGRLVFTPIMLGWLIGAMAFGAMLGSLVATPFIFAFFDQTPGESGWQWLVFGPFMF
VGAVFGFQYWRMASGADAYFGLTGDSHGSARFANRKELKKLQRQDGLLIGRNPHTGRLLHYDGPAHLITL
APTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTVYVLDPFEVSGHPSAAYNPLDRLTP
DSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLPPEKLR
ALLELMQDSDEAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIARCLARSDFAFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDVARDAERPQGASDGHSQRLKTPALFMLDEFAALGRLEAVERAM
GLMAGYGLQLWPILQDMSQLKDLYGDRANTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQTDSFKP
GDGPSFSNNLTGRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYFADPEFAGLFTPEA
MRGVMLVFGGLFRFFGRLVFTPIMLGWLIGAMAFGAMLGSLVATPFIFAFFDQTPGESGWQWLVFGPFMF
VGAVFGFQYWRMASGADAYFGLTGDSHGSARFANRKELKKLQRQDGLLIGRNPHTGRLLHYDGPAHLITL
APTRAGKGVGTVIPNLLAAERSVLVIDPKGENARIAGEARRRFGTVYVLDPFEVSGHPSAAYNPLDRLTP
DSLDLGEDAASLTEALVMDPPGQVTEAHWNEEAKAILGGLIMFCVCHEDRDRRSLATVREYLTLPPEKLR
ALLELMQDSDEAGGLIARAANRFLGKADREAASVLSNAQRHTHFLDSPRIARCLARSDFAFSDLRHRITS
VFLVLPPNRMDAYSRWLRLLVSQALQDVARDAERPQGASDGHSQRLKTPALFMLDEFAALGRLEAVERAM
GLMAGYGLQLWPILQDMSQLKDLYGDRANTFIANAGVQQVFGVNDFETAKWLSQMIGQETAGFQTDSFKP
GDGPSFSNNLTGRDLLTPDEIMQLPPDRQLLRVQGQATAVAQKLRYFADPEFAGLFTPEA
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 14627 | GenBank | NC_008388 |
| Plasmid name | pTB3 | Incompatibility group | - |
| Plasmid size | 16575 bp | Coordinate of oriT [Strand] | 3207..3226 [-] |
| Host baterium | Roseobacter denitrificans OCh 114 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |